Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC15.2■□□□□ 0.02
APOEP02649 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.2■□□□□ 0.02
APOEP02649 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.2■□□□□ 0.02
APOEP02649 AL645933.1-201ENST00000440087 609 ntBASIC15.2■□□□□ 0.02
APOEP02649 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 AC099548.2-209ENST00000480264 625 ntBASIC15.2■□□□□ 0.02
APOEP02649 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.2■□□□□ 0.02
APOEP02649 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.2■□□□□ 0.02
APOEP02649 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.2■□□□□ 0.02
APOEP02649 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.2■□□□□ 0.02
APOEP02649 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.2■□□□□ 0.02
APOEP02649 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.2■□□□□ 0.02
APOEP02649 RN7SL163P-201ENST00000583100 276 ntBASIC15.2■□□□□ 0.02
APOEP02649 AC005324.6-201ENST00000587972 613 ntBASIC15.2■□□□□ 0.02
APOEP02649 AC008805.1-201ENST00000590892 364 ntBASIC15.2■□□□□ 0.02
APOEP02649 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 AL136295.7-201ENST00000619226 1200 ntBASIC15.2■□□□□ 0.02
APOEP02649 Z98259.2-201ENST00000641583 609 ntBASIC15.2■□□□□ 0.02
APOEP02649 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.2■□□□□ 0.02
APOEP02649 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.2■□□□□ 0.02
APOEP02649 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 AC020907.1-201ENST00000616460 1350 ntBASIC15.2■□□□□ 0.02
APOEP02649 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 AC004899.1-201ENST00000424687 1714 ntBASIC15.2■□□□□ 0.02
APOEP02649 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
APOEP02649 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.2■□□□□ 0.02
APOEP02649 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
APOEP02649 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
APOEP02649 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
APOEP02649 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
APOEP02649 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.19■□□□□ 0.02
APOEP02649 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.19■□□□□ 0.02
APOEP02649 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.19■□□□□ 0.02
APOEP02649 RPL18P13-201ENST00000478088 569 ntBASIC15.19■□□□□ 0.02
APOEP02649 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.19■□□□□ 0.02
APOEP02649 AC091804.1-201ENST00000486888 567 ntBASIC15.19■□□□□ 0.02
APOEP02649 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.19■□□□□ 0.02
APOEP02649 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.19■□□□□ 0.02
APOEP02649 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 AC027237.1-201ENST00000560942 655 ntBASIC15.19■□□□□ 0.02
APOEP02649 AC022748.3-201ENST00000621828 275 ntBASIC15.19■□□□□ 0.02
APOEP02649 AC004923.1-202ENST00000642106 209 ntBASIC15.19■□□□□ 0.02
APOEP02649 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
APOEP02649 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.19■□□□□ 0.02
APOEP02649 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC15.19■□□□□ 0.02
APOEP02649 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.19■□□□□ 0.02
APOEP02649 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.19■□□□□ 0.02
APOEP02649 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
APOEP02649 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
APOEP02649 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
APOEP02649 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.19■□□□□ 0.02
APOEP02649 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
APOEP02649 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms