Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC8.54□□□□□ -1.04
HSPG2P98160 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
HSPG2P98160 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 CD9-212ENST00000610354 1315 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 RIPPLY2-201ENST00000369687 521 ntAPPRIS ALT2 TSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
HSPG2P98160 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC8.54□□□□□ -1.04
HSPG2P98160 HLA-W-207ENST00000439514 771 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC8.54□□□□□ -1.04
HSPG2P98160 U62317.4-201ENST00000609758 448 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 AL158032.2-201ENST00000616818 195 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 NOS2P3-201ENST00000411468 867 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 SDCBP2P1-201ENST00000416115 614 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 NOS2P2-201ENST00000426269 867 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 TCP10L-202ENST00000472557 732 ntAPPRIS ALT2 TSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 MIR378I-201ENST00000582688 76 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC8.54□□□□□ -1.04
HSPG2P98160 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 AL121992.3-201ENST00000606186 346 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 GSN-209ENST00000449733 2702 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 AL513477.1-201ENST00000602865 2407 ntBASIC8.53□□□□□ -1.04
HSPG2P98160 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC8.53□□□□□ -1.04
HSPG2P98160 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 RNA5SP84-201ENST00000364740 107 ntBASIC8.53□□□□□ -1.04
HSPG2P98160 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC8.53□□□□□ -1.04
HSPG2P98160 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 COQ10BP2-201ENST00000513804 724 ntBASIC8.53□□□□□ -1.04
HSPG2P98160 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC8.53□□□□□ -1.04
HSPG2P98160 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 AP002852.2-202ENST00000523572 592 ntTSL 4 BASIC8.53□□□□□ -1.04
HSPG2P98160 RN7SL5P-201ENST00000581458 321 ntBASIC8.53□□□□□ -1.04
HSPG2P98160 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
HSPG2P98160 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 RBP1-206ENST00000617459 667 ntTSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 AC007274.3-201ENST00000619838 385 ntBASIC8.53□□□□□ -1.04
HSPG2P98160 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
HSPG2P98160 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 AL356583.1-201ENST00000398739 1371 ntBASIC8.53□□□□□ -1.04
HSPG2P98160 AC018529.2-202ENST00000611482 3087 ntBASIC8.53□□□□□ -1.04
HSPG2P98160 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC8.53□□□□□ -1.04
HSPG2P98160 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC8.53□□□□□ -1.04
HSPG2P98160 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
HSPG2P98160 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms