Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC4P56524 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC4P56524 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC4P56524 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 MBLAC2-202ENST00000514906 1936 ntBASIC15.14■□□□□ 0.01
HDAC4P56524 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 AC144522.1-201ENST00000625111 1658 ntBASIC15.14■□□□□ 0.01
HDAC4P56524 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 ST13P19-201ENST00000442505 1124 ntBASIC15.14■□□□□ 0.01
HDAC4P56524 AL591846.1-201ENST00000451736 433 ntBASIC15.14■□□□□ 0.01
HDAC4P56524 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 AL160314.3-201ENST00000556041 767 ntBASIC15.14■□□□□ 0.01
HDAC4P56524 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.14■□□□□ 0.01
HDAC4P56524 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC4P56524 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.14■□□□□ 0.01
HDAC4P56524 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.14■□□□□ 0.01
HDAC4P56524 AC009884.2-201ENST00000603110 324 ntBASIC15.14■□□□□ 0.01
HDAC4P56524 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.14■□□□□ 0.01
HDAC4P56524 AL033527.4-201ENST00000641026 673 ntBASIC15.14■□□□□ 0.01
HDAC4P56524 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HDAC4P56524 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
HDAC4P56524 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 AL022313.4-201ENST00000562756 2046 ntBASIC15.14■□□□□ 0.01
HDAC4P56524 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HDAC4P56524 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HDAC4P56524 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.14■□□□□ 0.01
HDAC4P56524 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 TCAM1P-207ENST00000485295 1537 ntBASIC15.13■□□□□ 0.01
HDAC4P56524 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.13■□□□□ 0.01
HDAC4P56524 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
HDAC4P56524 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.13■□□□□ 0.01
HDAC4P56524 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.13■□□□□ 0.01
HDAC4P56524 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.13■□□□□ 0.01
HDAC4P56524 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.13■□□□□ 0.01
HDAC4P56524 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.13■□□□□ 0.01
HDAC4P56524 AC006122.1-201ENST00000493323 440 ntBASIC15.13■□□□□ 0.01
HDAC4P56524 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC15.13■□□□□ 0.01
HDAC4P56524 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.13■□□□□ 0.01
HDAC4P56524 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.13■□□□□ 0.01
HDAC4P56524 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 AC005324.6-201ENST00000587972 613 ntBASIC15.13■□□□□ 0.01
HDAC4P56524 AL008721.1-201ENST00000609964 604 ntBASIC15.13■□□□□ 0.01
HDAC4P56524 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.13■□□□□ 0.01
HDAC4P56524 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDAC4P56524 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HDAC4P56524 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms