Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDH12P55289 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDH12P55289 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
CDH12P55289 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC13.56□□□□□ -0.24
CDH12P55289 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDH12P55289 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.56□□□□□ -0.24
CDH12P55289 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDH12P55289 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDH12P55289 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CDH12P55289 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CDH12P55289 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.56□□□□□ -0.24
CDH12P55289 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 AC020910.5-201ENST00000623668 1865 ntBASIC13.55□□□□□ -0.24
CDH12P55289 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.55□□□□□ -0.24
CDH12P55289 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.55□□□□□ -0.24
CDH12P55289 AC012441.1-201ENST00000446669 685 ntBASIC13.55□□□□□ -0.24
CDH12P55289 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 MESTP3-201ENST00000503460 968 ntBASIC13.55□□□□□ -0.24
CDH12P55289 TERF1P3-201ENST00000505638 1227 ntBASIC13.55□□□□□ -0.24
CDH12P55289 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.55□□□□□ -0.24
CDH12P55289 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 AC138696.2-201ENST00000607376 223 ntBASIC13.55□□□□□ -0.24
CDH12P55289 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 TUBB8P4-201ENST00000511806 1324 ntBASIC13.55□□□□□ -0.24
CDH12P55289 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
CDH12P55289 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
CDH12P55289 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CDH12P55289 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.54□□□□□ -0.24
CDH12P55289 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC13.54□□□□□ -0.24
CDH12P55289 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.54□□□□□ -0.24
CDH12P55289 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
CDH12P55289 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CDH12P55289 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms