Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC14.99□□□□□ -0.01
COL4A4P53420 AC113347.2-201ENST00000512350 279 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC14.99□□□□□ -0.01
COL4A4P53420 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC14.99□□□□□ -0.01
COL4A4P53420 AL359219.1-201ENST00000556311 934 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 CES1P2-201ENST00000566467 1242 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 MED11-202ENST00000573708 802 ntTSL 2 BASIC14.99□□□□□ -0.01
COL4A4P53420 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC14.99□□□□□ -0.01
COL4A4P53420 URAHP-205ENST00000610227 398 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 AC004466.2-201ENST00000614749 516 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 BAP1-211ENST00000615113 489 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
COL4A4P53420 SHMT1P1-201ENST00000419974 1312 ntBASIC14.99□□□□□ -0.01
COL4A4P53420 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
COL4A4P53420 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.99□□□□□ -0.01
COL4A4P53420 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL4A4P53420 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
COL4A4P53420 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
COL4A4P53420 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.98□□□□□ -0.01
COL4A4P53420 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.98□□□□□ -0.01
COL4A4P53420 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC14.98□□□□□ -0.01
COL4A4P53420 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 TREX1-203ENST00000456089 629 ntTSL 3 BASIC14.98□□□□□ -0.01
COL4A4P53420 BCRP4-201ENST00000506079 804 ntBASIC14.98□□□□□ -0.01
COL4A4P53420 AC093300.1-201ENST00000510368 1201 ntBASIC14.98□□□□□ -0.01
COL4A4P53420 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC14.98□□□□□ -0.01
COL4A4P53420 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC14.98□□□□□ -0.01
COL4A4P53420 AC079414.2-201ENST00000567157 1104 ntBASIC14.98□□□□□ -0.01
COL4A4P53420 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC14.98□□□□□ -0.01
COL4A4P53420 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
COL4A4P53420 AL031673.1-201ENST00000611460 466 ntBASIC14.98□□□□□ -0.01
COL4A4P53420 BX322534.1-201ENST00000635574 241 ntBASIC14.98□□□□□ -0.01
COL4A4P53420 AC215524.1-201ENST00000635696 241 ntBASIC14.98□□□□□ -0.01
COL4A4P53420 AL357143.1-203ENST00000639750 881 ntBASIC14.98□□□□□ -0.01
COL4A4P53420 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.98□□□□□ -0.01
COL4A4P53420 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
COL4A4P53420 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC14.98□□□□□ -0.01
COL4A4P53420 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL4A4P53420 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
COL4A4P53420 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 AC098657.1-201ENST00000416270 1135 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 FAM21EP-201ENST00000417804 985 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 KRT18P62-201ENST00000446618 1287 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC14.97□□□□□ -0.01
COL4A4P53420 AC078814.4-201ENST00000546650 327 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 SRP14-208ENST00000560773 468 ntTSL 3 BASIC14.97□□□□□ -0.01
COL4A4P53420 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 MIR4746-201ENST00000579802 71 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC14.97□□□□□ -0.01
COL4A4P53420 AC126755.5-201ENST00000622756 267 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 AC090643.2-201ENST00000623442 2029 ntBASIC14.97□□□□□ -0.01
COL4A4P53420 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC14.97□□□□□ -0.01
COL4A4P53420 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
COL4A4P53420 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL4A4P53420 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.97□□□□□ -0.01
COL4A4P53420 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms