Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
NKX2-1P43699 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 MIR1233-2-201ENST00000408138 82 ntBASIC11.92□□□□□ -0.5
NKX2-1P43699 MIR1233-1-201ENST00000408722 82 ntBASIC11.92□□□□□ -0.5
NKX2-1P43699 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
NKX2-1P43699 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 MEIS3P1-201ENST00000495167 958 ntBASIC11.92□□□□□ -0.5
NKX2-1P43699 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC11.92□□□□□ -0.5
NKX2-1P43699 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC11.92□□□□□ -0.5
NKX2-1P43699 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC11.92□□□□□ -0.5
NKX2-1P43699 AL512356.2-201ENST00000546955 174 ntBASIC11.92□□□□□ -0.5
NKX2-1P43699 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC11.92□□□□□ -0.5
NKX2-1P43699 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC11.92□□□□□ -0.5
NKX2-1P43699 KRT18P8-201ENST00000581937 1246 ntBASIC11.92□□□□□ -0.5
NKX2-1P43699 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 AC093813.1-201ENST00000605066 256 ntBASIC11.92□□□□□ -0.5
NKX2-1P43699 AL138828.2-201ENST00000615812 383 ntBASIC11.92□□□□□ -0.5
NKX2-1P43699 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC11.92□□□□□ -0.5
NKX2-1P43699 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 HAL-202ENST00000538703 2637 ntTSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
NKX2-1P43699 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
NKX2-1P43699 CR383656.2-201ENST00000548656 2254 ntBASIC11.91□□□□□ -0.5
NKX2-1P43699 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 AC118758.2-201ENST00000614242 2813 ntBASIC11.91□□□□□ -0.5
NKX2-1P43699 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 LSM5-207ENST00000410044 687 ntTSL 3 BASIC11.91□□□□□ -0.5
NKX2-1P43699 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 PPP6R2P1-201ENST00000450880 1275 ntBASIC11.91□□□□□ -0.5
NKX2-1P43699 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC11.91□□□□□ -0.5
NKX2-1P43699 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC11.91□□□□□ -0.5
NKX2-1P43699 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 AC103988.2-201ENST00000561804 725 ntBASIC11.91□□□□□ -0.5
NKX2-1P43699 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 RAB34-223ENST00000636154 730 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC11.91□□□□□ -0.5
NKX2-1P43699 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC11.91□□□□□ -0.5
NKX2-1P43699 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 AP002761.4-201ENST00000565433 3361 ntBASIC11.91□□□□□ -0.5
NKX2-1P43699 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NKX2-1P43699 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC11.91□□□□□ -0.5
NKX2-1P43699 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 234 ms