Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
BRCA1P38398 AC018529.2-202ENST00000611482 3087 ntBASIC16.85■□□□□ 0.29
BRCA1P38398 AC090505.1-201ENST00000430515 1834 ntBASIC16.85■□□□□ 0.29
BRCA1P38398 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
BRCA1P38398 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.84■□□□□ 0.29
BRCA1P38398 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
BRCA1P38398 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 AC008021.1-201ENST00000474180 414 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 AF186996.6-201ENST00000485294 149 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
BRCA1P38398 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 PCTP-206ENST00000573500 919 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC16.84■□□□□ 0.29
BRCA1P38398 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 SNORA50D-202ENST00000627561 132 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 CDIPT-AS1-203ENST00000638164 713 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.84■□□□□ 0.29
BRCA1P38398 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.84■□□□□ 0.29
BRCA1P38398 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
BRCA1P38398 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
BRCA1P38398 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 KRT8P38-201ENST00000441370 1430 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.84■□□□□ 0.29
BRCA1P38398 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.84■□□□□ 0.29
BRCA1P38398 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
BRCA1P38398 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 RN7SL832P-201ENST00000607781 1756 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
BRCA1P38398 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 SNORD88B-201ENST00000408454 91 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16.84■□□□□ 0.29
BRCA1P38398 AC026884.1-201ENST00000418296 457 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 KRT18P42-201ENST00000505048 1255 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 AC114812.4-201ENST00000506676 757 ntBASIC16.84■□□□□ 0.29
BRCA1P38398 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC16.84■□□□□ 0.29
BRCA1P38398 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BRCA1P38398 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.84■□□□□ 0.29
BRCA1P38398 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC16.84■□□□□ 0.29
BRCA1P38398 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.83■□□□□ 0.29
BRCA1P38398 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
BRCA1P38398 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
BRCA1P38398 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
BRCA1P38398 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
BRCA1P38398 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
BRCA1P38398 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
BRCA1P38398 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.83■□□□□ 0.29
BRCA1P38398 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC16.83■□□□□ 0.29
BRCA1P38398 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
BRCA1P38398 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.83■□□□□ 0.29
BRCA1P38398 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
BRCA1P38398 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
BRCA1P38398 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
BRCA1P38398 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
BRCA1P38398 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
BRCA1P38398 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC16.83■□□□□ 0.28
BRCA1P38398 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC16.83■□□□□ 0.28
BRCA1P38398 AC092865.2-201ENST00000439409 971 ntBASIC16.83■□□□□ 0.28
BRCA1P38398 AC104115.1-201ENST00000484005 623 ntBASIC16.83■□□□□ 0.28
BRCA1P38398 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC16.83■□□□□ 0.28
BRCA1P38398 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC16.83■□□□□ 0.28
BRCA1P38398 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC16.83■□□□□ 0.28
BRCA1P38398 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
BRCA1P38398 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC16.83■□□□□ 0.28
BRCA1P38398 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC16.83■□□□□ 0.28
BRCA1P38398 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
BRCA1P38398 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
BRCA1P38398 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.83■□□□□ 0.28
BRCA1P38398 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC16.83■□□□□ 0.28
BRCA1P38398 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
BRCA1P38398 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.83■□□□□ 0.28
BRCA1P38398 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC16.82■□□□□ 0.28
BRCA1P38398 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC16.82■□□□□ 0.28
BRCA1P38398 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 MIR4640-201ENST00000581824 90 ntBASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms