Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 MBP-201ENST00000354542 575 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 PTPA-217ENST00000434095 870 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
BDNFP23560 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC15.23■□□□□ 0.03
BDNFP23560 RN7SL277P-201ENST00000481521 288 ntBASIC15.23■□□□□ 0.03
BDNFP23560 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC15.23■□□□□ 0.03
BDNFP23560 RN7SL530P-201ENST00000485097 298 ntBASIC15.23■□□□□ 0.03
BDNFP23560 AC008723.1-201ENST00000506922 207 ntBASIC15.23■□□□□ 0.03
BDNFP23560 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 AC140658.4-201ENST00000561990 352 ntBASIC15.23■□□□□ 0.03
BDNFP23560 MIR3907-201ENST00000579424 151 ntBASIC15.23■□□□□ 0.03
BDNFP23560 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.23■□□□□ 0.03
BDNFP23560 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC15.23■□□□□ 0.03
BDNFP23560 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.23■□□□□ 0.03
BDNFP23560 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 AL022334.2-201ENST00000610000 484 ntBASIC15.23■□□□□ 0.03
BDNFP23560 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.23■□□□□ 0.03
BDNFP23560 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
BDNFP23560 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
BDNFP23560 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
BDNFP23560 AC104581.4-201ENST00000623126 3052 ntBASIC15.23■□□□□ 0.03
BDNFP23560 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.23■□□□□ 0.03
BDNFP23560 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
BDNFP23560 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.22■□□□□ 0.03
BDNFP23560 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
BDNFP23560 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
BDNFP23560 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 OR2K2-202ENST00000374428 1038 ntBASIC15.22■□□□□ 0.03
BDNFP23560 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.22■□□□□ 0.03
BDNFP23560 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC15.22■□□□□ 0.03
BDNFP23560 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 AC026320.2-201ENST00000434379 478 ntBASIC15.22■□□□□ 0.03
BDNFP23560 DUX4L50-201ENST00000455245 715 ntBASIC15.22■□□□□ 0.03
BDNFP23560 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC15.22■□□□□ 0.03
BDNFP23560 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 AC026803.1-201ENST00000569130 274 ntBASIC15.22■□□□□ 0.03
BDNFP23560 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.22■□□□□ 0.03
BDNFP23560 LINC01783-202ENST00000614408 828 ntBASIC15.22■□□□□ 0.03
BDNFP23560 BX284668.2-205ENST00000619677 828 ntBASIC15.22■□□□□ 0.03
BDNFP23560 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 TBC1D3J-201ENST00000620719 1426 ntBASIC15.22■□□□□ 0.03
BDNFP23560 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
BDNFP23560 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
BDNFP23560 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
BDNFP23560 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.22■□□□□ 0.03
BDNFP23560 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
BDNFP23560 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.22■□□□□ 0.03
BDNFP23560 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.21■□□□□ 0.03
BDNFP23560 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.21■□□□□ 0.03
BDNFP23560 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
BDNFP23560 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.21■□□□□ 0.03
BDNFP23560 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms