Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.77□□□□□ -0.05
COL9A1P20849 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
COL9A1P20849 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 PPT1-215ENST00000641471 2368 ntBASIC14.77□□□□□ -0.05
COL9A1P20849 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
COL9A1P20849 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 AC138035.3-201ENST00000622706 2791 ntBASIC14.77□□□□□ -0.05
COL9A1P20849 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.77□□□□□ -0.05
COL9A1P20849 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL9A1P20849 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
COL9A1P20849 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.76□□□□□ -0.05
COL9A1P20849 LINC00554-201ENST00000564841 3011 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.76□□□□□ -0.05
COL9A1P20849 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 AL117378.2-201ENST00000622916 1337 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
COL9A1P20849 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
COL9A1P20849 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC14.76□□□□□ -0.05
COL9A1P20849 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 AC147876.1-201ENST00000504408 322 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.76□□□□□ -0.05
COL9A1P20849 AC022784.5-201ENST00000522241 437 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
COL9A1P20849 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 AC013553.1-201ENST00000560906 267 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC14.76□□□□□ -0.05
COL9A1P20849 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 RN7SL524P-201ENST00000581152 300 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 AC239600.1-201ENST00000603201 462 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 AC022001.3-201ENST00000606330 596 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC14.76□□□□□ -0.05
COL9A1P20849 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 AL590440.2-201ENST00000641973 1595 ntBASIC14.76□□□□□ -0.05
COL9A1P20849 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
COL9A1P20849 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL9A1P20849 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
COL9A1P20849 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.76□□□□□ -0.05
COL9A1P20849 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.75□□□□□ -0.05
COL9A1P20849 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
COL9A1P20849 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC14.75□□□□□ -0.05
COL9A1P20849 GOLGA6L16P-201ENST00000441780 1299 ntBASIC14.75□□□□□ -0.05
COL9A1P20849 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.75□□□□□ -0.05
COL9A1P20849 MTND2P3-201ENST00000452458 470 ntBASIC14.75□□□□□ -0.05
COL9A1P20849 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 SEPHS2P1-201ENST00000511618 1162 ntBASIC14.75□□□□□ -0.05
COL9A1P20849 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL9A1P20849 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC14.75□□□□□ -0.05
COL9A1P20849 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC14.75□□□□□ -0.05
COL9A1P20849 AL591767.1-201ENST00000557160 568 ntTSL 4 BASIC14.75□□□□□ -0.05
COL9A1P20849 LINC01922-201ENST00000562582 719 ntBASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms