Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 AC138761.6-201ENST00000583997 1423 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 AC090502.4-201ENST00000551714 1386 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 AC089987.1-201ENST00000551654 2209 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC17.76■□□□□ 0.43
CACNA1FO60840 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CACNA1FO60840 GGTLC4P-201ENST00000402176 664 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 OR52M2P-201ENST00000414298 959 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC17.76■□□□□ 0.43
CACNA1FO60840 AL354861.1-201ENST00000445213 355 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.76■□□□□ 0.43
CACNA1FO60840 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.76■□□□□ 0.43
CACNA1FO60840 IGHV3-37-201ENST00000518544 340 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 AP000911.2-201ENST00000534330 502 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC17.76■□□□□ 0.43
CACNA1FO60840 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC17.76■□□□□ 0.43
CACNA1FO60840 GARS-210ENST00000627489 324 ntTSL 4 BASIC17.76■□□□□ 0.43
CACNA1FO60840 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC17.76■□□□□ 0.43
CACNA1FO60840 AP001184.1-201ENST00000637936 376 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 AL359845.1-201ENST00000458202 1648 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 ODCP-201ENST00000459650 1639 ntBASIC17.76■□□□□ 0.43
CACNA1FO60840 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CACNA1FO60840 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.76■□□□□ 0.43
CACNA1FO60840 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC17.76■□□□□ 0.43
CACNA1FO60840 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CACNA1FO60840 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CACNA1FO60840 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CACNA1FO60840 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CACNA1FO60840 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC17.75■□□□□ 0.43
CACNA1FO60840 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC17.75■□□□□ 0.43
CACNA1FO60840 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.75■□□□□ 0.43
CACNA1FO60840 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC17.75■□□□□ 0.43
CACNA1FO60840 AC025186.1-201ENST00000478174 870 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 MT3-203ENST00000565838 421 ntTSL 3 BASIC17.75■□□□□ 0.43
CACNA1FO60840 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC17.75■□□□□ 0.43
CACNA1FO60840 AP000322.3-201ENST00000608665 388 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 AC011491.1-203ENST00000637688 543 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 AC024075.2-201ENST00000598112 1473 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.75■□□□□ 0.43
CACNA1FO60840 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.75■□□□□ 0.43
CACNA1FO60840 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 TBC1D27-202ENST00000424239 1573 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CACNA1FO60840 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.75■□□□□ 0.43
CACNA1FO60840 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC17.75■□□□□ 0.43
CACNA1FO60840 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC17.75■□□□□ 0.43
CACNA1FO60840 COX5A-205ENST00000568517 582 ntTSL 3 BASIC17.75■□□□□ 0.43
CACNA1FO60840 AC092171.5-201ENST00000608012 942 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 AC007250.1-201ENST00000608934 338 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CACNA1FO60840 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 MARK2P9-201ENST00000430958 1727 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 AC025183.3-201ENST00000623526 1482 ntBASIC17.75■□□□□ 0.43
CACNA1FO60840 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.75■□□□□ 0.43
CACNA1FO60840 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CACNA1FO60840 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CACNA1FO60840 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CACNA1FO60840 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC17.74■□□□□ 0.43
CACNA1FO60840 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CACNA1FO60840 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CACNA1FO60840 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CACNA1FO60840 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms