Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 APP-205ENST00000358918 2366 ntTSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 OR8S1-201ENST00000310194 1080 ntBASIC11.76□□□□□ -0.53
FOXA2Q9Y261 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 PGF-202ENST00000405431 666 ntTSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 FAM8A4P-201ENST00000435433 1213 ntBASIC11.76□□□□□ -0.53
FOXA2Q9Y261 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 IGHV3-71-201ENST00000523324 359 ntBASIC11.76□□□□□ -0.53
FOXA2Q9Y261 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC078819.1-201ENST00000547454 765 ntBASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC012085.1-201ENST00000548270 765 ntBASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC027237.1-201ENST00000560942 655 ntBASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AHCYP2-201ENST00000430630 1300 ntBASIC11.76□□□□□ -0.53
FOXA2Q9Y261 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 CROT-203ENST00000419147 2959 ntTSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 PPP1R26P4-201ENST00000619065 3527 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 HADH-202ENST00000403312 1752 ntTSL 5 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC092053.3-201ENST00000641308 4975 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 LSS-211ENST00000522411 2523 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC006001.1-201ENST00000325130 474 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC004945.1-201ENST00000416738 983 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 WBP2-203ENST00000433525 928 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AC023310.1-201ENST00000554836 735 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 AP005482.1-201ENST00000563722 1273 ntBASIC11.75□□□□□ -0.53
FOXA2Q9Y261 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC11.75□□□□□ -0.53
FOXA2Q9Y261 OR10B1P-201ENST00000601666 907 ntBASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms