Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AC092115.1-201ENST00000566277 1402 ntBASIC17.82■□□□□ 0.44
RC3H1Q5TC82 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 USP39-220ENST00000613444 2161 ntTSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 CD81-209ENST00000492627 886 ntTSL 3 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RC3H1Q5TC82 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 RHOC-205ENST00000369636 786 ntTSL 2 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 DKKL1P1-201ENST00000400550 698 ntBASIC17.81■□□□□ 0.44
RC3H1Q5TC82 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 GOLGA6L16P-201ENST00000441780 1299 ntBASIC17.81■□□□□ 0.44
RC3H1Q5TC82 AC025594.1-201ENST00000469533 543 ntBASIC17.81■□□□□ 0.44
RC3H1Q5TC82 RPS18P9-201ENST00000482817 460 ntBASIC17.81■□□□□ 0.44
RC3H1Q5TC82 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 AC078814.4-201ENST00000546650 327 ntBASIC17.81■□□□□ 0.44
RC3H1Q5TC82 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 AC026336.4-201ENST00000624565 1050 ntBASIC17.81■□□□□ 0.44
RC3H1Q5TC82 AC139713.2-207ENST00000641556 1292 ntBASIC17.81■□□□□ 0.44
RC3H1Q5TC82 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RC3H1Q5TC82 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 AL590824.1-201ENST00000403828 1349 ntBASIC17.8■□□□□ 0.44
RC3H1Q5TC82 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 AC106827.1-201ENST00000366454 431 ntBASIC17.8■□□□□ 0.44
RC3H1Q5TC82 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RC3H1Q5TC82 AC022447.6-201ENST00000515522 438 ntBASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms