Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC18.85■□□□□ 0.61
HOXC9P31274 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.85■□□□□ 0.61
HOXC9P31274 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
HOXC9P31274 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC9P31274 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HOXC9P31274 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC9P31274 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC9P31274 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HOXC9P31274 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HOXC9P31274 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HOXC9P31274 HCG27-204ENST00000424675 895 ntTSL 3 BASIC18.84■□□□□ 0.61
HOXC9P31274 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC18.84■□□□□ 0.61
HOXC9P31274 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.84■□□□□ 0.61
HOXC9P31274 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC18.84■□□□□ 0.61
HOXC9P31274 TREHP1-201ENST00000531328 465 ntBASIC18.84■□□□□ 0.61
HOXC9P31274 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HOXC9P31274 MT2A-202ENST00000561491 581 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC9P31274 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HOXC9P31274 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
HOXC9P31274 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
HOXC9P31274 ADK-205ENST00000539909 1866 ntTSL 2 BASIC18.84■□□□□ 0.61
HOXC9P31274 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.83■□□□□ 0.61
HOXC9P31274 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
HOXC9P31274 GOLGA8UP-201ENST00000527159 1755 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC9P31274 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC18.83■□□□□ 0.61
HOXC9P31274 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC18.83■□□□□ 0.61
HOXC9P31274 FAM90A21P-201ENST00000510875 1396 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 FAM90A15P-201ENST00000514465 1395 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 FAM90A6P-201ENST00000515148 1394 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 FAM90A16P-201ENST00000526662 1395 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 FAM90A9P-201ENST00000527940 1395 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 FAM90A5P-201ENST00000528738 1395 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 FAM90A14P-201ENST00000530386 1395 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 FAM90A13P-201ENST00000534703 1395 ntBASIC18.83■□□□□ 0.61
HOXC9P31274 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC18.83■□□□□ 0.61
HOXC9P31274 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
HOXC9P31274 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC9P31274 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC9P31274 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HOXC9P31274 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
HOXC9P31274 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HOXC9P31274 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
HOXC9P31274 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 NME4-203ENST00000397722 1232 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC9P31274 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 KRT17P4-201ENST00000429445 819 ntBASIC18.83■□□□□ 0.6
HOXC9P31274 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC9P31274 FOXN3-AS2-201ENST00000554071 1262 ntBASIC18.83■□□□□ 0.6
HOXC9P31274 USB1-205ENST00000561743 1135 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXC9P31274 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXC9P31274 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXC9P31274 THY1-209ENST00000580275 578 ntTSL 3 BASIC18.83■□□□□ 0.6
HOXC9P31274 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC9P31274 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 CICP24-201ENST00000605464 2705 ntBASIC18.83■□□□□ 0.6
HOXC9P31274 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HOXC9P31274 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC9P31274 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC18.83■□□□□ 0.6
HOXC9P31274 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
HOXC9P31274 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC18.82■□□□□ 0.6
HOXC9P31274 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC9P31274 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.82■□□□□ 0.6
HOXC9P31274 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HOXC9P31274 OR7E115P-201ENST00000382617 1024 ntBASIC18.82■□□□□ 0.6
HOXC9P31274 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms