Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
COL3A1P02461 MSANTD2P1-201ENST00000445341 1368 ntBASIC18.68■□□□□ 0.58
COL3A1P02461 AP002414.2-201ENST00000591780 3365 ntBASIC18.68■□□□□ 0.58
COL3A1P02461 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL3A1P02461 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL3A1P02461 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL3A1P02461 AGAP10P-201ENST00000454844 2418 ntBASIC18.67■□□□□ 0.58
COL3A1P02461 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC18.67■□□□□ 0.58
COL3A1P02461 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC18.67■□□□□ 0.58
COL3A1P02461 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC18.67■□□□□ 0.58
COL3A1P02461 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 AL354861.1-201ENST00000445213 355 ntBASIC18.67■□□□□ 0.58
COL3A1P02461 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC18.67■□□□□ 0.58
COL3A1P02461 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC18.67■□□□□ 0.58
COL3A1P02461 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL3A1P02461 CR383656.3-201ENST00000551315 183 ntBASIC18.67■□□□□ 0.58
COL3A1P02461 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.67■□□□□ 0.58
COL3A1P02461 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 AC140113.1-201ENST00000603467 169 ntBASIC18.67■□□□□ 0.58
COL3A1P02461 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL3A1P02461 GARS-210ENST00000627489 324 ntTSL 4 BASIC18.67■□□□□ 0.58
COL3A1P02461 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL3A1P02461 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL3A1P02461 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL3A1P02461 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC18.67■□□□□ 0.58
COL3A1P02461 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC18.67■□□□□ 0.58
COL3A1P02461 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL3A1P02461 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL3A1P02461 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL3A1P02461 AC025183.3-201ENST00000623526 1482 ntBASIC18.67■□□□□ 0.58
COL3A1P02461 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC18.67■□□□□ 0.58
COL3A1P02461 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.66■□□□□ 0.58
COL3A1P02461 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 LYPLA2P1-203ENST00000447689 696 ntBASIC18.66■□□□□ 0.58
COL3A1P02461 LDHBP1-201ENST00000455730 1119 ntBASIC18.66■□□□□ 0.58
COL3A1P02461 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 RN7SL357P-201ENST00000581065 298 ntBASIC18.66■□□□□ 0.58
COL3A1P02461 HELLS-212ENST00000630929 400 ntTSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL3A1P02461 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC18.66■□□□□ 0.58
COL3A1P02461 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
COL3A1P02461 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL3A1P02461 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC18.65■□□□□ 0.58
COL3A1P02461 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL3A1P02461 CSNK1G2P1-201ENST00000442675 955 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 GRPEL2P1-201ENST00000453145 339 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC18.65■□□□□ 0.58
COL3A1P02461 HERC2P11-201ENST00000562845 725 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 AC100756.2-201ENST00000569537 736 ntBASIC18.65■□□□□ 0.58
COL3A1P02461 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC18.65■□□□□ 0.58
COL3A1P02461 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC18.65■□□□□ 0.58
COL3A1P02461 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
COL3A1P02461 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL3A1P02461 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms