Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.99□□□□□ -0.17
SLC28A1O00337 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SLC28A1O00337 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.99□□□□□ -0.17
SLC28A1O00337 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.99□□□□□ -0.17
SLC28A1O00337 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.99□□□□□ -0.17
SLC28A1O00337 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.99□□□□□ -0.17
SLC28A1O00337 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
SLC28A1O00337 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.99□□□□□ -0.17
SLC28A1O00337 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
SLC28A1O00337 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.99□□□□□ -0.17
SLC28A1O00337 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 AC073548.1-201ENST00000624088 1882 ntBASIC13.99□□□□□ -0.17
SLC28A1O00337 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
SLC28A1O00337 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 AGAP10P-201ENST00000454844 2418 ntBASIC13.98□□□□□ -0.17
SLC28A1O00337 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
SLC28A1O00337 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
SLC28A1O00337 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.98□□□□□ -0.17
SLC28A1O00337 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 FTH1P14-201ENST00000482930 551 ntBASIC13.98□□□□□ -0.17
SLC28A1O00337 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.98□□□□□ -0.17
SLC28A1O00337 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.98□□□□□ -0.17
SLC28A1O00337 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.98□□□□□ -0.17
SLC28A1O00337 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 AC233724.13-201ENST00000598383 410 ntBASIC13.98□□□□□ -0.17
SLC28A1O00337 AC073413.1-201ENST00000603927 732 ntBASIC13.98□□□□□ -0.17
SLC28A1O00337 AL358472.3-201ENST00000608147 415 ntBASIC13.98□□□□□ -0.17
SLC28A1O00337 AC138951.2-201ENST00000623455 1161 ntBASIC13.98□□□□□ -0.17
SLC28A1O00337 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 HADH-202ENST00000403312 1752 ntTSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 AC015909.5-201ENST00000624336 2266 ntBASIC13.98□□□□□ -0.17
SLC28A1O00337 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.98□□□□□ -0.17
SLC28A1O00337 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.98□□□□□ -0.17
SLC28A1O00337 PTENP1-202ENST00000532280 3996 ntBASIC13.98□□□□□ -0.17
SLC28A1O00337 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SLC28A1O00337 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms