Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC005252.3-201ENST00000623855 2258 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC215219.1-201ENST00000400706 1817 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AKR7A2P1-201ENST00000460134 915 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC099548.2-209ENST00000480264 625 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 SCARNA21-201ENST00000517026 139 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC013355.1-201ENST00000562625 723 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 SNORD3B-2-202ENST00000571722 791 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC103810.3-201ENST00000583567 96 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC020914.3-201ENST00000594712 304 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC136759.1-202ENST00000530858 2194 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 FAM90A7P-201ENST00000382628 1395 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 FAM90A23P-201ENST00000400136 1395 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 AC138028.6-201ENST00000616106 1482 ntBASIC14.44□□□□□ -0.1
TRIM39Q9HCM9 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms