Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RFC3P40938 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
RFC3P40938 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.36□□□□□ -0.27
RFC3P40938 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RFC3P40938 RN7SKP214-201ENST00000364208 315 ntBASIC13.36□□□□□ -0.27
RFC3P40938 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.36□□□□□ -0.27
RFC3P40938 AL008707.1-201ENST00000422498 534 ntBASIC13.36□□□□□ -0.27
RFC3P40938 AL157407.1-201ENST00000435784 904 ntBASIC13.36□□□□□ -0.27
RFC3P40938 AL645933.1-201ENST00000440087 609 ntBASIC13.36□□□□□ -0.27
RFC3P40938 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 ALG3P1-201ENST00000508806 1114 ntBASIC13.36□□□□□ -0.27
RFC3P40938 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
RFC3P40938 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.36□□□□□ -0.27
RFC3P40938 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RFC3P40938 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.36□□□□□ -0.27
RFC3P40938 AC106872.11-201ENST00000605838 421 ntBASIC13.36□□□□□ -0.27
RFC3P40938 NAP1L6-202ENST00000641404 1222 ntBASIC13.36□□□□□ -0.27
RFC3P40938 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RFC3P40938 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.36□□□□□ -0.27
RFC3P40938 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
RFC3P40938 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
RFC3P40938 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.36□□□□□ -0.27
RFC3P40938 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.36□□□□□ -0.27
RFC3P40938 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.36□□□□□ -0.27
RFC3P40938 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RFC3P40938 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 AC144522.1-201ENST00000625111 1658 ntBASIC13.35□□□□□ -0.27
RFC3P40938 AC138969.2-201ENST00000532739 9932 ntBASIC13.35□□□□□ -0.27
RFC3P40938 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.35□□□□□ -0.27
RFC3P40938 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 AC006122.1-201ENST00000493323 440 ntBASIC13.35□□□□□ -0.27
RFC3P40938 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 AC134698.3-201ENST00000523880 214 ntBASIC13.35□□□□□ -0.27
RFC3P40938 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 FOS-206ENST00000555347 1280 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 AC016629.1-201ENST00000596579 586 ntBASIC13.35□□□□□ -0.27
RFC3P40938 AL132994.2-201ENST00000603120 687 ntBASIC13.35□□□□□ -0.27
RFC3P40938 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.35□□□□□ -0.27
RFC3P40938 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
RFC3P40938 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.35□□□□□ -0.27
RFC3P40938 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.35□□□□□ -0.27
RFC3P40938 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFC3P40938 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.35□□□□□ -0.27
RFC3P40938 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.34□□□□□ -0.27
RFC3P40938 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
RFC3P40938 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms