Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC12.67□□□□□ -0.38
COL8A1P27658 MIR6746-201ENST00000620971 63 ntBASIC12.67□□□□□ -0.38
COL8A1P27658 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
COL8A1P27658 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
COL8A1P27658 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC12.67□□□□□ -0.38
COL8A1P27658 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
COL8A1P27658 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 AC010491.1-201ENST00000563101 2797 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
COL8A1P27658 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
COL8A1P27658 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 IFNA1-201ENST00000276927 863 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
COL8A1P27658 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
COL8A1P27658 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
COL8A1P27658 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
COL8A1P27658 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC12.66□□□□□ -0.38
COL8A1P27658 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 MIR1301-201ENST00000408518 82 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 AC073869.2-201ENST00000417338 1026 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 CSNK1G2P1-201ENST00000442675 955 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC12.66□□□□□ -0.38
COL8A1P27658 AC093826.1-201ENST00000508655 993 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 PMEL-214ENST00000550447 901 ntTSL 3 BASIC12.66□□□□□ -0.38
COL8A1P27658 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 AL603832.2-201ENST00000566195 2125 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC12.66□□□□□ -0.38
COL8A1P27658 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC12.66□□□□□ -0.38
COL8A1P27658 AC006483.2-201ENST00000609813 515 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 AL022334.2-201ENST00000610000 484 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 AC110057.1-201ENST00000636031 898 ntBASIC12.66□□□□□ -0.38
COL8A1P27658 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
COL8A1P27658 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
COL8A1P27658 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
COL8A1P27658 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.65□□□□□ -0.38
COL8A1P27658 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
COL8A1P27658 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms