Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC12.38□□□□□ -0.43
USF1P22415 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC12.38□□□□□ -0.43
USF1P22415 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC12.38□□□□□ -0.43
USF1P22415 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 AC012044.1-201ENST00000603431 297 ntBASIC12.38□□□□□ -0.43
USF1P22415 AP000346.4-201ENST00000614827 381 ntBASIC12.38□□□□□ -0.43
USF1P22415 MIR7845-201ENST00000618396 99 ntBASIC12.38□□□□□ -0.43
USF1P22415 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
USF1P22415 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC12.38□□□□□ -0.43
USF1P22415 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 AL138725.1-201ENST00000407347 1314 ntBASIC12.37□□□□□ -0.43
USF1P22415 AL008718.2-201ENST00000609206 1313 ntBASIC12.37□□□□□ -0.43
USF1P22415 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.37□□□□□ -0.43
USF1P22415 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
USF1P22415 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC12.37□□□□□ -0.43
USF1P22415 PARVG-202ENST00000415224 999 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 ISCA2P1-201ENST00000425548 448 ntBASIC12.37□□□□□ -0.43
USF1P22415 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC12.37□□□□□ -0.43
USF1P22415 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 POU5F1P2-201ENST00000521750 823 ntBASIC12.37□□□□□ -0.43
USF1P22415 AL160314.3-201ENST00000556041 767 ntBASIC12.37□□□□□ -0.43
USF1P22415 IRF3-215ENST00000596822 823 ntTSL 3 BASIC12.37□□□□□ -0.43
USF1P22415 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
USF1P22415 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.37□□□□□ -0.43
USF1P22415 AP000845.1-201ENST00000581677 2131 ntBASIC12.37□□□□□ -0.43
USF1P22415 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USF1P22415 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC12.37□□□□□ -0.43
USF1P22415 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.36□□□□□ -0.43
USF1P22415 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 AC244394.1-201ENST00000435000 1665 ntBASIC12.36□□□□□ -0.43
USF1P22415 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 CICP14-201ENST00000629111 2732 ntBASIC12.36□□□□□ -0.43
USF1P22415 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 RN7SKP230-201ENST00000365642 335 ntBASIC12.36□□□□□ -0.43
USF1P22415 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC12.36□□□□□ -0.43
USF1P22415 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
USF1P22415 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC12.36□□□□□ -0.43
USF1P22415 TLE1P1-201ENST00000422965 589 ntBASIC12.36□□□□□ -0.43
USF1P22415 SKA2-202ENST00000437036 625 ntTSL 2 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms