Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.53□□□□□ -0.24
COL5A1P20908 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC13.53□□□□□ -0.24
COL5A1P20908 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
COL5A1P20908 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
COL5A1P20908 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC13.53□□□□□ -0.24
COL5A1P20908 AL080243.1-201ENST00000423293 1060 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 RPS18P9-201ENST00000482817 460 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC13.53□□□□□ -0.24
COL5A1P20908 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC13.53□□□□□ -0.24
COL5A1P20908 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL5A1P20908 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
COL5A1P20908 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL5A1P20908 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL5A1P20908 AL139158.3-201ENST00000641212 1562 ntBASIC13.52□□□□□ -0.24
COL5A1P20908 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
COL5A1P20908 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
COL5A1P20908 AC007952.5-201ENST00000572818 1486 ntBASIC13.52□□□□□ -0.24
COL5A1P20908 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.52□□□□□ -0.25
COL5A1P20908 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC13.52□□□□□ -0.25
COL5A1P20908 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.52□□□□□ -0.25
COL5A1P20908 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 USP17L6P-201ENST00000382470 1197 ntBASIC13.52□□□□□ -0.25
COL5A1P20908 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC13.52□□□□□ -0.25
COL5A1P20908 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC13.52□□□□□ -0.25
COL5A1P20908 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC13.52□□□□□ -0.25
COL5A1P20908 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC13.52□□□□□ -0.25
COL5A1P20908 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 AC092903.1-201ENST00000466506 262 ntBASIC13.52□□□□□ -0.25
COL5A1P20908 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC13.52□□□□□ -0.25
COL5A1P20908 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC13.52□□□□□ -0.25
COL5A1P20908 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.52□□□□□ -0.25
COL5A1P20908 TBC1D27-202ENST00000424239 1573 ntBASIC13.52□□□□□ -0.25
COL5A1P20908 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.52□□□□□ -0.25
COL5A1P20908 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.52□□□□□ -0.25
COL5A1P20908 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL5A1P20908 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.51□□□□□ -0.25
COL5A1P20908 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.51□□□□□ -0.25
COL5A1P20908 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.51□□□□□ -0.25
COL5A1P20908 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 U3.5-201ENST00000363448 216 ntBASIC13.51□□□□□ -0.25
COL5A1P20908 HLA-DMA-202ENST00000395303 1007 ntBASIC13.51□□□□□ -0.25
COL5A1P20908 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.51□□□□□ -0.25
COL5A1P20908 KRT18P15-201ENST00000458108 1291 ntBASIC13.51□□□□□ -0.25
COL5A1P20908 AC092896.1-201ENST00000465850 380 ntBASIC13.51□□□□□ -0.25
COL5A1P20908 RN7SL351P-201ENST00000469306 248 ntBASIC13.51□□□□□ -0.25
COL5A1P20908 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC13.51□□□□□ -0.25
COL5A1P20908 MT3-202ENST00000561640 514 ntTSL 3 BASIC13.51□□□□□ -0.25
COL5A1P20908 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
COL5A1P20908 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC13.51□□□□□ -0.25
COL5A1P20908 URAHP-205ENST00000610227 398 ntBASIC13.51□□□□□ -0.25
COL5A1P20908 AL031673.1-201ENST00000611460 466 ntBASIC13.51□□□□□ -0.25
COL5A1P20908 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 DBET-201ENST00000630918 3363 ntBASIC13.51□□□□□ -0.25
COL5A1P20908 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.51□□□□□ -0.25
COL5A1P20908 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL5A1P20908 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms