Protein–RNA interactions for Protein: Q9HCC9

ZFYVE28, Lateral signaling target protein 2 homolog, humanhuman

Predictions only

Length 887 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZFYVE28Q9HCC9 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
ZFYVE28Q9HCC9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC26.27■■□□□ 1.8
ZFYVE28Q9HCC9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
ZFYVE28Q9HCC9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
ZFYVE28Q9HCC9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
ZFYVE28Q9HCC9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC26.27■■□□□ 1.8
ZFYVE28Q9HCC9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.27■■□□□ 1.8
ZFYVE28Q9HCC9 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
ZFYVE28Q9HCC9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC26.25■■□□□ 1.79
ZFYVE28Q9HCC9 HLA-L-209ENST00000420110 1011 ntBASIC26.25■■□□□ 1.79
ZFYVE28Q9HCC9 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
ZFYVE28Q9HCC9 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.25■■□□□ 1.79
ZFYVE28Q9HCC9 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
ZFYVE28Q9HCC9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC26.25■■□□□ 1.79
ZFYVE28Q9HCC9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
ZFYVE28Q9HCC9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 KRT18P14-201ENST00000534205 1250 ntBASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.23■■□□□ 1.79
ZFYVE28Q9HCC9 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.22■■□□□ 1.79
ZFYVE28Q9HCC9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC26.22■■□□□ 1.79
ZFYVE28Q9HCC9 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
ZFYVE28Q9HCC9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.21■■□□□ 1.79
ZFYVE28Q9HCC9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
ZFYVE28Q9HCC9 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
ZFYVE28Q9HCC9 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC26.2■■□□□ 1.78
ZFYVE28Q9HCC9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC26.2■■□□□ 1.78
ZFYVE28Q9HCC9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
ZFYVE28Q9HCC9 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.2■■□□□ 1.78
ZFYVE28Q9HCC9 LINC02228-203ENST00000641970 1355 ntBASIC26.2■■□□□ 1.78
ZFYVE28Q9HCC9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 TERF1P2-201ENST00000583350 1212 ntBASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.19■■□□□ 1.78
ZFYVE28Q9HCC9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
ZFYVE28Q9HCC9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC26.18■■□□□ 1.78
ZFYVE28Q9HCC9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC26.18■■□□□ 1.78
ZFYVE28Q9HCC9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
ZFYVE28Q9HCC9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
ZFYVE28Q9HCC9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
ZFYVE28Q9HCC9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
ZFYVE28Q9HCC9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
ZFYVE28Q9HCC9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
ZFYVE28Q9HCC9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC26.17■■□□□ 1.78
ZFYVE28Q9HCC9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
ZFYVE28Q9HCC9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
ZFYVE28Q9HCC9 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
ZFYVE28Q9HCC9 AC141586.4-201ENST00000624558 1573 ntBASIC26.16■■□□□ 1.78
ZFYVE28Q9HCC9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
ZFYVE28Q9HCC9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.16■■□□□ 1.78
ZFYVE28Q9HCC9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC26.16■■□□□ 1.78
ZFYVE28Q9HCC9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
ZFYVE28Q9HCC9 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
ZFYVE28Q9HCC9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms