Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
RC3H2Q9HBD1 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RC3H2Q9HBD1 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 pRNA.6-201ENST00000610482 90 ntBASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 pRNA.5-201ENST00000612139 90 ntBASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 IKBKGP1-201ENST00000612193 1073 ntBASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 pRNA.11-201ENST00000618423 90 ntBASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 pRNA.13-201ENST00000619112 90 ntBASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 RARRES2P11-201ENST00000635158 484 ntBASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
RC3H2Q9HBD1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 KRT18P5-201ENST00000436075 1291 ntBASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 AC022517.1-201ENST00000592429 346 ntBASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RC3H2Q9HBD1 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 SLC47A1P1-202ENST00000449666 945 ntBASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 DUX4L2-201ENST00000561772 1275 ntBASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 DUX4L6-201ENST00000626483 1275 ntBASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 DUX4L1-201ENST00000627662 1275 ntBASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 DUX4L8-201ENST00000629013 1275 ntBASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 DUX4L3-201ENST00000630187 1275 ntBASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 DUX4L7-201ENST00000630678 1275 ntBASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 DUX4L5-201ENST00000630834 1275 ntBASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.44■■□□□ 1.5
RC3H2Q9HBD1 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 AC090192.1-201ENST00000517740 490 ntBASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 AC092437.1-201ENST00000624794 1048 ntBASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.43■■□□□ 1.5
RC3H2Q9HBD1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 TSPY26P-201ENST00000476365 1326 ntBASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 AC126544.1-201ENST00000580842 1059 ntBASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RC3H2Q9HBD1 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 AC027612.3-201ENST00000413684 1047 ntBASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 HLA-L-211ENST00000482052 1765 ntBASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.41■■□□□ 1.5
RC3H2Q9HBD1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 RAB43-208ENST00000615093 783 ntTSL 5 BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RC3H2Q9HBD1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
RC3H2Q9HBD1 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
RC3H2Q9HBD1 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC24.39■■□□□ 1.49
RC3H2Q9HBD1 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms