Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 RNF126P1-201ENST00000567452 1320 ntBASIC20.74■□□□□ 0.91
COPS4Q9BT78 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.74■□□□□ 0.91
COPS4Q9BT78 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COPS4Q9BT78 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
COPS4Q9BT78 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.73■□□□□ 0.91
COPS4Q9BT78 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.73■□□□□ 0.91
COPS4Q9BT78 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COPS4Q9BT78 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.73■□□□□ 0.91
COPS4Q9BT78 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COPS4Q9BT78 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.72■□□□□ 0.91
COPS4Q9BT78 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.72■□□□□ 0.91
COPS4Q9BT78 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COPS4Q9BT78 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COPS4Q9BT78 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.72■□□□□ 0.91
COPS4Q9BT78 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COPS4Q9BT78 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
COPS4Q9BT78 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COPS4Q9BT78 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COPS4Q9BT78 FOXO3B-201ENST00000395675 1928 ntBASIC20.72■□□□□ 0.91
COPS4Q9BT78 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COPS4Q9BT78 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.72■□□□□ 0.91
COPS4Q9BT78 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPS4Q9BT78 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPS4Q9BT78 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPS4Q9BT78 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COPS4Q9BT78 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.71■□□□□ 0.91
COPS4Q9BT78 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPS4Q9BT78 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COPS4Q9BT78 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.71■□□□□ 0.91
COPS4Q9BT78 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.7■□□□□ 0.9
COPS4Q9BT78 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
COPS4Q9BT78 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.7■□□□□ 0.9
COPS4Q9BT78 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 KRT18P10-201ENST00000388836 1287 ntBASIC20.7■□□□□ 0.9
COPS4Q9BT78 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 AC133552.2-201ENST00000619106 1032 ntBASIC20.7■□□□□ 0.9
COPS4Q9BT78 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.7■□□□□ 0.9
COPS4Q9BT78 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COPS4Q9BT78 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPS4Q9BT78 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
COPS4Q9BT78 AC009831.1-201ENST00000580420 1582 ntBASIC20.69■□□□□ 0.9
COPS4Q9BT78 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPS4Q9BT78 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.69■□□□□ 0.9
COPS4Q9BT78 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.69■□□□□ 0.9
COPS4Q9BT78 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPS4Q9BT78 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPS4Q9BT78 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPS4Q9BT78 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COPS4Q9BT78 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COPS4Q9BT78 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPS4Q9BT78 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPS4Q9BT78 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPS4Q9BT78 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COPS4Q9BT78 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPS4Q9BT78 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPS4Q9BT78 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COPS4Q9BT78 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPS4Q9BT78 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPS4Q9BT78 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPS4Q9BT78 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COPS4Q9BT78 AC007375.3-201ENST00000600936 2314 ntBASIC20.67■□□□□ 0.9
COPS4Q9BT78 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPS4Q9BT78 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPS4Q9BT78 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPS4Q9BT78 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COPS4Q9BT78 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
COPS4Q9BT78 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.66■□□□□ 0.9
COPS4Q9BT78 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPS4Q9BT78 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPS4Q9BT78 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
COPS4Q9BT78 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COPS4Q9BT78 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COPS4Q9BT78 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPS4Q9BT78 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COPS4Q9BT78 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPS4Q9BT78 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COPS4Q9BT78 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COPS4Q9BT78 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPS4Q9BT78 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
COPS4Q9BT78 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms