Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
NR1H4Q96RI1 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
NR1H4Q96RI1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 AC044849.2-201ENST00000606596 710 ntBASIC21.34■■□□□ 1.01
NR1H4Q96RI1 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 ESRRAP2-201ENST00000418437 1549 ntBASIC21.34■■□□□ 1.01
NR1H4Q96RI1 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
NR1H4Q96RI1 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
NR1H4Q96RI1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
NR1H4Q96RI1 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
NR1H4Q96RI1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
NR1H4Q96RI1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
NR1H4Q96RI1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
NR1H4Q96RI1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NR1H4Q96RI1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NR1H4Q96RI1 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.32■■□□□ 1
NR1H4Q96RI1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NR1H4Q96RI1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
NR1H4Q96RI1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
NR1H4Q96RI1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
NR1H4Q96RI1 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.31■■□□□ 1
NR1H4Q96RI1 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 RNF165-205ENST00000588679 2904 ntBASIC21.31■■□□□ 1
NR1H4Q96RI1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
NR1H4Q96RI1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.31■■□□□ 1
NR1H4Q96RI1 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.31■■□□□ 1
NR1H4Q96RI1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
NR1H4Q96RI1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NR1H4Q96RI1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.3■■□□□ 1
NR1H4Q96RI1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NR1H4Q96RI1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NR1H4Q96RI1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
NR1H4Q96RI1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.3■■□□□ 1
NR1H4Q96RI1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.3■■□□□ 1
NR1H4Q96RI1 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.3■■□□□ 1
NR1H4Q96RI1 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NR1H4Q96RI1 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
NR1H4Q96RI1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
NR1H4Q96RI1 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.3■■□□□ 1
NR1H4Q96RI1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
NR1H4Q96RI1 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NR1H4Q96RI1 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.29■■□□□ 1
NR1H4Q96RI1 C11orf96-202ENST00000528572 1834 ntBASIC21.29■■□□□ 1
NR1H4Q96RI1 FBXW4P1-201ENST00000426721 2239 ntBASIC21.29■■□□□ 1
NR1H4Q96RI1 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.29■■□□□ 1
NR1H4Q96RI1 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NR1H4Q96RI1 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NR1H4Q96RI1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NR1H4Q96RI1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NR1H4Q96RI1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.29■■□□□ 1
NR1H4Q96RI1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
NR1H4Q96RI1 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
NR1H4Q96RI1 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.28■■□□□ 1
NR1H4Q96RI1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.28■■□□□ 1
NR1H4Q96RI1 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.28■■□□□ 1
NR1H4Q96RI1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.28■■□□□ 1
NR1H4Q96RI1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
NR1H4Q96RI1 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NR1H4Q96RI1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.28■■□□□ 1
NR1H4Q96RI1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.28■■□□□ 1
NR1H4Q96RI1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.28■■□□□ 1
NR1H4Q96RI1 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NR1H4Q96RI1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.28■■□□□ 1
NR1H4Q96RI1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.28■■□□□ 1
NR1H4Q96RI1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.27■■□□□ 1
NR1H4Q96RI1 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NR1H4Q96RI1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NR1H4Q96RI1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
NR1H4Q96RI1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.27■■□□□ 1
NR1H4Q96RI1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NR1H4Q96RI1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms