Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
COL21A1Q96P44 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL21A1Q96P44 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL21A1Q96P44 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL21A1Q96P44 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
COL21A1Q96P44 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
COL21A1Q96P44 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.32■■□□□ 1
COL21A1Q96P44 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
COL21A1Q96P44 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
COL21A1Q96P44 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
COL21A1Q96P44 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL21A1Q96P44 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.32■■□□□ 1
COL21A1Q96P44 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL21A1Q96P44 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.32■■□□□ 1
COL21A1Q96P44 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL21A1Q96P44 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL21A1Q96P44 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.31■■□□□ 1
COL21A1Q96P44 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL21A1Q96P44 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL21A1Q96P44 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.31■■□□□ 1
COL21A1Q96P44 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.31■■□□□ 1
COL21A1Q96P44 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
COL21A1Q96P44 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.31■■□□□ 1
COL21A1Q96P44 KRT125P-201ENST00000546827 989 ntBASIC21.31■■□□□ 1
COL21A1Q96P44 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.31■■□□□ 1
COL21A1Q96P44 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
COL21A1Q96P44 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
COL21A1Q96P44 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COL21A1Q96P44 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL21A1Q96P44 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.31■■□□□ 1
COL21A1Q96P44 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL21A1Q96P44 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.31■■□□□ 1
COL21A1Q96P44 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
COL21A1Q96P44 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COL21A1Q96P44 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.31■■□□□ 1
COL21A1Q96P44 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.3■■□□□ 1
COL21A1Q96P44 CLDN5-201ENST00000403084 2357 ntBASIC21.3■■□□□ 1
COL21A1Q96P44 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
COL21A1Q96P44 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
COL21A1Q96P44 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.3■■□□□ 1
COL21A1Q96P44 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.3■■□□□ 1
COL21A1Q96P44 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.3■■□□□ 1
COL21A1Q96P44 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.3■■□□□ 1
COL21A1Q96P44 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COL21A1Q96P44 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.3■■□□□ 1
COL21A1Q96P44 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
COL21A1Q96P44 AL161729.1-201ENST00000604104 1402 ntBASIC21.29■■□□□ 1
COL21A1Q96P44 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.29■■□□□ 1
COL21A1Q96P44 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
COL21A1Q96P44 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
COL21A1Q96P44 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 AC021242.3-201ENST00000607598 1377 ntBASIC21.29■■□□□ 1
COL21A1Q96P44 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 AC239859.2-201ENST00000444165 318 ntBASIC21.29■■□□□ 1
COL21A1Q96P44 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.29■■□□□ 1
COL21A1Q96P44 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL21A1Q96P44 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL21A1Q96P44 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL21A1Q96P44 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL21A1Q96P44 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL21A1Q96P44 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.28■■□□□ 1
COL21A1Q96P44 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
COL21A1Q96P44 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL21A1Q96P44 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL21A1Q96P44 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL21A1Q96P44 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.28■■□□□ 1
COL21A1Q96P44 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL21A1Q96P44 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL21A1Q96P44 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.27■■□□□ 1
COL21A1Q96P44 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL21A1Q96P44 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.27■■□□□ 1
COL21A1Q96P44 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.27■■□□□ 1
COL21A1Q96P44 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL21A1Q96P44 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL21A1Q96P44 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL21A1Q96P44 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL21A1Q96P44 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL21A1Q96P44 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL21A1Q96P44 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL21A1Q96P44 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL21A1Q96P44 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL21A1Q96P44 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL21A1Q96P44 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.26■□□□□ 0.99
COL21A1Q96P44 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.26■□□□□ 0.99
COL21A1Q96P44 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
COL21A1Q96P44 AL022069.1-201ENST00000568025 1636 ntBASIC21.26■□□□□ 0.99
COL21A1Q96P44 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL21A1Q96P44 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
COL21A1Q96P44 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL21A1Q96P44 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL21A1Q96P44 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
COL21A1Q96P44 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.25■□□□□ 0.99
COL21A1Q96P44 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms