Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 ALDH1A3-203ENST00000557963 1670 ntBASIC22.22■■□□□ 1.15
LMX1AQ8TE12 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
LMX1AQ8TE12 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.21■■□□□ 1.15
LMX1AQ8TE12 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LMX1AQ8TE12 CA15P2-201ENST00000611168 834 ntBASIC22.21■■□□□ 1.15
LMX1AQ8TE12 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LMX1AQ8TE12 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.21■■□□□ 1.15
LMX1AQ8TE12 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LMX1AQ8TE12 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LMX1AQ8TE12 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.21■■□□□ 1.15
LMX1AQ8TE12 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.15
LMX1AQ8TE12 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 RASA4CP-201ENST00000424092 1398 ntBASIC22.2■■□□□ 1.14
LMX1AQ8TE12 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LMX1AQ8TE12 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 RBM38-205ENST00000440234 686 ntTSL 2 BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 AC027682.1-201ENST00000562846 899 ntBASIC22.19■■□□□ 1.14
LMX1AQ8TE12 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
LMX1AQ8TE12 AC135731.1-201ENST00000569415 2548 ntBASIC22.19■■□□□ 1.14
LMX1AQ8TE12 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LMX1AQ8TE12 AP003733.4-201ENST00000623785 1697 ntBASIC22.18■■□□□ 1.14
LMX1AQ8TE12 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LMX1AQ8TE12 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LMX1AQ8TE12 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.18■■□□□ 1.14
LMX1AQ8TE12 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LMX1AQ8TE12 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LMX1AQ8TE12 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
LMX1AQ8TE12 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.17■■□□□ 1.14
LMX1AQ8TE12 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LMX1AQ8TE12 AC026271.2-201ENST00000428091 497 ntBASIC22.17■■□□□ 1.14
LMX1AQ8TE12 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.17■■□□□ 1.14
LMX1AQ8TE12 MIR3181-201ENST00000578512 73 ntBASIC22.17■■□□□ 1.14
LMX1AQ8TE12 AC136469.2-201ENST00000623944 1028 ntBASIC22.17■■□□□ 1.14
LMX1AQ8TE12 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
LMX1AQ8TE12 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
LMX1AQ8TE12 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.17■■□□□ 1.14
LMX1AQ8TE12 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
LMX1AQ8TE12 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LMX1AQ8TE12 AC099791.1-201ENST00000416440 715 ntBASIC22.16■■□□□ 1.14
LMX1AQ8TE12 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LMX1AQ8TE12 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
LMX1AQ8TE12 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 CREM-210ENST00000374721 2020 ntTSL 5 BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LMX1AQ8TE12 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
LMX1AQ8TE12 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.14■■□□□ 1.13
LMX1AQ8TE12 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LMX1AQ8TE12 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LMX1AQ8TE12 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LMX1AQ8TE12 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
LMX1AQ8TE12 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LMX1AQ8TE12 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LMX1AQ8TE12 pRNA.6-201ENST00000610482 90 ntBASIC22.13■■□□□ 1.13
LMX1AQ8TE12 pRNA.5-201ENST00000612139 90 ntBASIC22.13■■□□□ 1.13
LMX1AQ8TE12 pRNA.11-201ENST00000618423 90 ntBASIC22.13■■□□□ 1.13
LMX1AQ8TE12 pRNA.13-201ENST00000619112 90 ntBASIC22.13■■□□□ 1.13
LMX1AQ8TE12 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.13■■□□□ 1.13
LMX1AQ8TE12 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LMX1AQ8TE12 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
LMX1AQ8TE12 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.12■■□□□ 1.13
LMX1AQ8TE12 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.12■■□□□ 1.13
LMX1AQ8TE12 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.12■■□□□ 1.13
LMX1AQ8TE12 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms