Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 AC133561.4-201ENST00000566112 224 ntBASIC21.01■□□□□ 0.95
BEST3Q8N1M1 AL161729.1-201ENST00000604104 1402 ntBASIC21.01■□□□□ 0.95
BEST3Q8N1M1 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
BEST3Q8N1M1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21■□□□□ 0.95
BEST3Q8N1M1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21■□□□□ 0.95
BEST3Q8N1M1 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21■□□□□ 0.95
BEST3Q8N1M1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BEST3Q8N1M1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
BEST3Q8N1M1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21■□□□□ 0.95
BEST3Q8N1M1 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 AP003733.4-201ENST00000623785 1697 ntBASIC20.99■□□□□ 0.95
BEST3Q8N1M1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 AC135279.3-201ENST00000610945 1311 ntBASIC20.99■□□□□ 0.95
BEST3Q8N1M1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
BEST3Q8N1M1 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.98■□□□□ 0.95
BEST3Q8N1M1 AC009102.2-201ENST00000606772 1639 ntBASIC20.98■□□□□ 0.95
BEST3Q8N1M1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.98■□□□□ 0.95
BEST3Q8N1M1 MIR935-201ENST00000401179 91 ntBASIC20.98■□□□□ 0.95
BEST3Q8N1M1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
BEST3Q8N1M1 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
BEST3Q8N1M1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 AC024257.2-201ENST00000549699 147 ntBASIC20.96■□□□□ 0.95
BEST3Q8N1M1 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.96■□□□□ 0.95
BEST3Q8N1M1 AC142381.3-201ENST00000568208 1670 ntBASIC20.96■□□□□ 0.95
BEST3Q8N1M1 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 DUX4L19-201ENST00000557448 1267 ntBASIC20.95■□□□□ 0.94
BEST3Q8N1M1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
BEST3Q8N1M1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 AC092171.4-201ENST00000609130 632 ntBASIC20.94■□□□□ 0.94
BEST3Q8N1M1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 AC138932.3-201ENST00000567634 1902 ntBASIC20.94■□□□□ 0.94
BEST3Q8N1M1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
BEST3Q8N1M1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.93■□□□□ 0.94
BEST3Q8N1M1 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.93■□□□□ 0.94
BEST3Q8N1M1 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.93■□□□□ 0.94
BEST3Q8N1M1 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BEST3Q8N1M1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
BEST3Q8N1M1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.93■□□□□ 0.94
BEST3Q8N1M1 AC099791.2-201ENST00000605725 427 ntBASIC20.93■□□□□ 0.94
BEST3Q8N1M1 SYT6-210ENST00000641643 1587 ntBASIC20.93■□□□□ 0.94
BEST3Q8N1M1 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
BEST3Q8N1M1 ALDH1A3-203ENST00000557963 1670 ntBASIC20.93■□□□□ 0.94
BEST3Q8N1M1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
BEST3Q8N1M1 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms