Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.31■□□□□ 0.84
H3F3AP84243 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
H3F3AP84243 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
H3F3AP84243 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
H3F3AP84243 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
H3F3AP84243 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
H3F3AP84243 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
H3F3AP84243 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
H3F3AP84243 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
H3F3AP84243 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
H3F3AP84243 AL356441.2-201ENST00000443009 864 ntBASIC20.3■□□□□ 0.84
H3F3AP84243 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.3■□□□□ 0.84
H3F3AP84243 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.3■□□□□ 0.84
H3F3AP84243 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.3■□□□□ 0.84
H3F3AP84243 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
H3F3AP84243 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
H3F3AP84243 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
H3F3AP84243 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
H3F3AP84243 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.29■□□□□ 0.84
H3F3AP84243 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
H3F3AP84243 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
H3F3AP84243 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
H3F3AP84243 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
H3F3AP84243 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
H3F3AP84243 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
H3F3AP84243 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
H3F3AP84243 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
H3F3AP84243 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.28■□□□□ 0.84
H3F3AP84243 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
H3F3AP84243 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
H3F3AP84243 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
H3F3AP84243 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
H3F3AP84243 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
H3F3AP84243 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
H3F3AP84243 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.27■□□□□ 0.84
H3F3AP84243 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
H3F3AP84243 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.27■□□□□ 0.84
H3F3AP84243 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
H3F3AP84243 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
H3F3AP84243 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
H3F3AP84243 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
H3F3AP84243 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.27■□□□□ 0.84
H3F3AP84243 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.83
H3F3AP84243 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
H3F3AP84243 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
H3F3AP84243 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
H3F3AP84243 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
H3F3AP84243 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
H3F3AP84243 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
H3F3AP84243 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.26■□□□□ 0.83
H3F3AP84243 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
H3F3AP84243 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
H3F3AP84243 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
H3F3AP84243 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
H3F3AP84243 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.25■□□□□ 0.83
H3F3AP84243 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
H3F3AP84243 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
H3F3AP84243 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
H3F3AP84243 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.25■□□□□ 0.83
H3F3AP84243 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
H3F3AP84243 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.24■□□□□ 0.83
H3F3AP84243 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
H3F3AP84243 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.24■□□□□ 0.83
H3F3AP84243 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.24■□□□□ 0.83
H3F3AP84243 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.24■□□□□ 0.83
H3F3AP84243 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
H3F3AP84243 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
H3F3AP84243 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.24■□□□□ 0.83
H3F3AP84243 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
H3F3AP84243 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
H3F3AP84243 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
H3F3AP84243 MIR3621-201ENST00000580529 85 ntBASIC20.23■□□□□ 0.83
H3F3AP84243 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
H3F3AP84243 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
H3F3AP84243 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.23■□□□□ 0.83
H3F3AP84243 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
H3F3AP84243 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
H3F3AP84243 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
H3F3AP84243 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
H3F3AP84243 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.22■□□□□ 0.83
H3F3AP84243 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.22■□□□□ 0.83
H3F3AP84243 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.22■□□□□ 0.83
H3F3AP84243 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.22■□□□□ 0.83
H3F3AP84243 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
H3F3AP84243 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
H3F3AP84243 AL117332.1-201ENST00000622628 974 ntBASIC20.22■□□□□ 0.83
H3F3AP84243 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
H3F3AP84243 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
H3F3AP84243 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
H3F3AP84243 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
H3F3AP84243 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
H3F3AP84243 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
H3F3AP84243 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
H3F3AP84243 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
H3F3AP84243 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
H3F3AP84243 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
H3F3AP84243 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
H3F3AP84243 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
H3F3AP84243 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.21■□□□□ 0.83
H3F3AP84243 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms