Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ABCD3P28288 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ABCD3P28288 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
ABCD3P28288 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
ABCD3P28288 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.92■□□□□ 0.94
ABCD3P28288 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.92■□□□□ 0.94
ABCD3P28288 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ABCD3P28288 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ABCD3P28288 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
ABCD3P28288 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
ABCD3P28288 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ABCD3P28288 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.91■□□□□ 0.94
ABCD3P28288 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ABCD3P28288 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.91■□□□□ 0.94
ABCD3P28288 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
ABCD3P28288 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.91■□□□□ 0.94
ABCD3P28288 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ABCD3P28288 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
ABCD3P28288 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ABCD3P28288 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ABCD3P28288 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.91■□□□□ 0.94
ABCD3P28288 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ABCD3P28288 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ABCD3P28288 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
ABCD3P28288 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ABCD3P28288 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ABCD3P28288 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
ABCD3P28288 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ABCD3P28288 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ABCD3P28288 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.9■□□□□ 0.94
ABCD3P28288 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ABCD3P28288 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.9■□□□□ 0.94
ABCD3P28288 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
ABCD3P28288 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ABCD3P28288 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ABCD3P28288 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.89■□□□□ 0.93
ABCD3P28288 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.89■□□□□ 0.93
ABCD3P28288 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.89■□□□□ 0.93
ABCD3P28288 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.89■□□□□ 0.93
ABCD3P28288 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.89■□□□□ 0.93
ABCD3P28288 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ABCD3P28288 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ABCD3P28288 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ABCD3P28288 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.88■□□□□ 0.93
ABCD3P28288 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.88■□□□□ 0.93
ABCD3P28288 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.88■□□□□ 0.93
ABCD3P28288 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ABCD3P28288 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.88■□□□□ 0.93
ABCD3P28288 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.88■□□□□ 0.93
ABCD3P28288 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ABCD3P28288 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.88■□□□□ 0.93
ABCD3P28288 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.88■□□□□ 0.93
ABCD3P28288 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCD3P28288 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCD3P28288 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCD3P28288 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.87■□□□□ 0.93
ABCD3P28288 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCD3P28288 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCD3P28288 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.87■□□□□ 0.93
ABCD3P28288 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.87■□□□□ 0.93
ABCD3P28288 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCD3P28288 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCD3P28288 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCD3P28288 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.86■□□□□ 0.93
ABCD3P28288 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ABCD3P28288 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
ABCD3P28288 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ABCD3P28288 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ABCD3P28288 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ABCD3P28288 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
ABCD3P28288 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ABCD3P28288 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ABCD3P28288 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.85■□□□□ 0.93
ABCD3P28288 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
ABCD3P28288 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.85■□□□□ 0.93
ABCD3P28288 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.85■□□□□ 0.93
ABCD3P28288 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.85■□□□□ 0.93
ABCD3P28288 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.85■□□□□ 0.93
ABCD3P28288 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.85■□□□□ 0.93
ABCD3P28288 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ABCD3P28288 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.84■□□□□ 0.93
ABCD3P28288 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ABCD3P28288 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ABCD3P28288 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.84■□□□□ 0.93
ABCD3P28288 AC131281.2-201ENST00000520478 145 ntBASIC20.84■□□□□ 0.93
ABCD3P28288 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.84■□□□□ 0.93
ABCD3P28288 AL512631.2-201ENST00000604634 923 ntBASIC20.84■□□□□ 0.93
ABCD3P28288 AC009102.2-201ENST00000606772 1639 ntBASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms