Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 AC092437.1-201ENST00000624794 1048 ntBASIC24.28■■□□□ 1.48
RB1P06400 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.28■■□□□ 1.48
RB1P06400 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RB1P06400 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.28■■□□□ 1.48
RB1P06400 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.27■■□□□ 1.48
RB1P06400 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC24.27■■□□□ 1.48
RB1P06400 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.27■■□□□ 1.48
RB1P06400 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RB1P06400 AC092803.2-201ENST00000564287 1899 ntBASIC24.27■■□□□ 1.48
RB1P06400 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
RB1P06400 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RB1P06400 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RB1P06400 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RB1P06400 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RB1P06400 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RB1P06400 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RB1P06400 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RB1P06400 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC24.26■■□□□ 1.47
RB1P06400 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC24.26■■□□□ 1.47
RB1P06400 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.26■■□□□ 1.47
RB1P06400 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.26■■□□□ 1.47
RB1P06400 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
RB1P06400 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24.26■■□□□ 1.47
RB1P06400 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RB1P06400 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RB1P06400 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.25■■□□□ 1.47
RB1P06400 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RB1P06400 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RB1P06400 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RB1P06400 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
RB1P06400 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
RB1P06400 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RB1P06400 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC24.25■■□□□ 1.47
RB1P06400 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
RB1P06400 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
RB1P06400 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RB1P06400 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
RB1P06400 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
RB1P06400 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.24■■□□□ 1.47
RB1P06400 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
RB1P06400 MIR572-201ENST00000384983 95 ntBASIC24.24■■□□□ 1.47
RB1P06400 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.24■■□□□ 1.47
RB1P06400 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.24■■□□□ 1.47
RB1P06400 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.23■■□□□ 1.47
RB1P06400 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RB1P06400 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.23■■□□□ 1.47
RB1P06400 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.23■■□□□ 1.47
RB1P06400 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24.23■■□□□ 1.47
RB1P06400 IGHV3-19-201ENST00000521488 291 ntBASIC24.23■■□□□ 1.47
RB1P06400 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC24.23■■□□□ 1.47
RB1P06400 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RB1P06400 AC141586.4-201ENST00000624558 1573 ntBASIC24.23■■□□□ 1.47
RB1P06400 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
RB1P06400 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
RB1P06400 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RB1P06400 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
RB1P06400 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
RB1P06400 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.22■■□□□ 1.47
RB1P06400 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.22■■□□□ 1.47
RB1P06400 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.22■■□□□ 1.47
RB1P06400 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
RB1P06400 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.22■■□□□ 1.47
RB1P06400 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.22■■□□□ 1.47
RB1P06400 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
RB1P06400 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.22■■□□□ 1.47
RB1P06400 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.22■■□□□ 1.47
RB1P06400 AL354811.1-201ENST00000610286 706 ntBASIC24.22■■□□□ 1.47
RB1P06400 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC24.22■■□□□ 1.47
RB1P06400 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
RB1P06400 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC24.22■■□□□ 1.47
RB1P06400 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
RB1P06400 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.21■■□□□ 1.47
RB1P06400 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.21■■□□□ 1.47
RB1P06400 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.21■■□□□ 1.47
RB1P06400 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
RB1P06400 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC24.21■■□□□ 1.47
RB1P06400 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RB1P06400 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
RB1P06400 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RB1P06400 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RB1P06400 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
RB1P06400 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.21■■□□□ 1.47
RB1P06400 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.21■■□□□ 1.47
RB1P06400 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.21■■□□□ 1.47
RB1P06400 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
RB1P06400 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
RB1P06400 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
RB1P06400 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
RB1P06400 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
RB1P06400 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
RB1P06400 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC24.2■■□□□ 1.46
RB1P06400 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.2■■□□□ 1.46
RB1P06400 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.2■■□□□ 1.46
RB1P06400 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
RB1P06400 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
RB1P06400 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.19■■□□□ 1.46
RB1P06400 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.19■■□□□ 1.46
RB1P06400 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.19■■□□□ 1.46
RB1P06400 AC004911.1-201ENST00000416316 871 ntBASIC24.19■■□□□ 1.46
RB1P06400 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms