Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDX4O14627 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.22■■□□□ 1.15
CDX4O14627 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CDX4O14627 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDX4O14627 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
CDX4O14627 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDX4O14627 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDX4O14627 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
CDX4O14627 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
CDX4O14627 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.21■■□□□ 1.15
CDX4O14627 IGHV3-19-201ENST00000521488 291 ntBASIC22.21■■□□□ 1.15
CDX4O14627 AL354811.1-201ENST00000610286 706 ntBASIC22.21■■□□□ 1.15
CDX4O14627 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
CDX4O14627 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.2■■□□□ 1.14
CDX4O14627 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CDX4O14627 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDX4O14627 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.2■■□□□ 1.14
CDX4O14627 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CDX4O14627 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.2■■□□□ 1.14
CDX4O14627 KRT18P14-201ENST00000534205 1250 ntBASIC22.2■■□□□ 1.14
CDX4O14627 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC22.2■■□□□ 1.14
CDX4O14627 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CDX4O14627 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.2■■□□□ 1.14
CDX4O14627 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC22.2■■□□□ 1.14
CDX4O14627 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CDX4O14627 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC22.19■■□□□ 1.14
CDX4O14627 TERF1P2-201ENST00000583350 1212 ntBASIC22.19■■□□□ 1.14
CDX4O14627 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CDX4O14627 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.19■■□□□ 1.14
CDX4O14627 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CDX4O14627 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CDX4O14627 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.18■■□□□ 1.14
CDX4O14627 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
CDX4O14627 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC22.18■■□□□ 1.14
CDX4O14627 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.18■■□□□ 1.14
CDX4O14627 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.18■■□□□ 1.14
CDX4O14627 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CDX4O14627 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
CDX4O14627 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
CDX4O14627 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.18■■□□□ 1.14
CDX4O14627 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CDX4O14627 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
CDX4O14627 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.17■■□□□ 1.14
CDX4O14627 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
CDX4O14627 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDX4O14627 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDX4O14627 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.17■■□□□ 1.14
CDX4O14627 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDX4O14627 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDX4O14627 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.17■■□□□ 1.14
CDX4O14627 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDX4O14627 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.16■■□□□ 1.14
CDX4O14627 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDX4O14627 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDX4O14627 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC22.16■■□□□ 1.14
CDX4O14627 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDX4O14627 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.16■■□□□ 1.14
CDX4O14627 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
CDX4O14627 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDX4O14627 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.16■■□□□ 1.14
CDX4O14627 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
CDX4O14627 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDX4O14627 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.15■■□□□ 1.14
CDX4O14627 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CDX4O14627 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CDX4O14627 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDX4O14627 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
CDX4O14627 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC22.15■■□□□ 1.14
CDX4O14627 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.15■■□□□ 1.14
CDX4O14627 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
CDX4O14627 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDX4O14627 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CDX4O14627 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CDX4O14627 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.15■■□□□ 1.14
CDX4O14627 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CDX4O14627 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CDX4O14627 TK2-208ENST00000545043 1120 ntTSL 2 BASIC22.14■■□□□ 1.13
CDX4O14627 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX4O14627 LINC02228-203ENST00000641970 1355 ntBASIC22.13■■□□□ 1.13
CDX4O14627 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX4O14627 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX4O14627 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CDX4O14627 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX4O14627 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX4O14627 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC22.13■■□□□ 1.13
CDX4O14627 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC22.13■■□□□ 1.13
CDX4O14627 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CDX4O14627 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX4O14627 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.13■■□□□ 1.13
CDX4O14627 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CDX4O14627 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.12■■□□□ 1.13
CDX4O14627 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC22.12■■□□□ 1.13
CDX4O14627 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.12■■□□□ 1.13
CDX4O14627 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.12■■□□□ 1.13
CDX4O14627 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.12■■□□□ 1.13
CDX4O14627 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX4O14627 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.11■■□□□ 1.13
CDX4O14627 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CDX4O14627 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CDX4O14627 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms