Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
UPK1AO00322 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
UPK1AO00322 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
UPK1AO00322 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.55■■□□□ 1.04
UPK1AO00322 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
UPK1AO00322 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
UPK1AO00322 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
UPK1AO00322 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
UPK1AO00322 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.54■■□□□ 1.04
UPK1AO00322 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
UPK1AO00322 AC103724.3-201ENST00000564481 992 ntBASIC21.54■■□□□ 1.04
UPK1AO00322 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
UPK1AO00322 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
UPK1AO00322 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.54■■□□□ 1.04
UPK1AO00322 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
UPK1AO00322 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
UPK1AO00322 AC233723.2-201ENST00000623798 2106 ntBASIC21.53■■□□□ 1.04
UPK1AO00322 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPK1AO00322 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
UPK1AO00322 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
UPK1AO00322 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
UPK1AO00322 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPK1AO00322 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
UPK1AO00322 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPK1AO00322 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
UPK1AO00322 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
UPK1AO00322 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.53■■□□□ 1.04
UPK1AO00322 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.53■■□□□ 1.04
UPK1AO00322 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
UPK1AO00322 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
UPK1AO00322 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.52■■□□□ 1.04
UPK1AO00322 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.52■■□□□ 1.04
UPK1AO00322 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
UPK1AO00322 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.52■■□□□ 1.04
UPK1AO00322 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
UPK1AO00322 AF131216.4-201ENST00000638924 1588 ntBASIC21.52■■□□□ 1.04
UPK1AO00322 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
UPK1AO00322 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.03
UPK1AO00322 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
UPK1AO00322 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.52■■□□□ 1.03
UPK1AO00322 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK1AO00322 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK1AO00322 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
UPK1AO00322 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK1AO00322 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK1AO00322 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
UPK1AO00322 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK1AO00322 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
UPK1AO00322 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
UPK1AO00322 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
UPK1AO00322 LINC00565-201ENST00000562710 2331 ntBASIC21.5■■□□□ 1.03
UPK1AO00322 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK1AO00322 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK1AO00322 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK1AO00322 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK1AO00322 AL161729.1-201ENST00000604104 1402 ntBASIC21.5■■□□□ 1.03
UPK1AO00322 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.5■■□□□ 1.03
UPK1AO00322 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.5■■□□□ 1.03
UPK1AO00322 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK1AO00322 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
UPK1AO00322 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
UPK1AO00322 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK1AO00322 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK1AO00322 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
UPK1AO00322 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.49■■□□□ 1.03
UPK1AO00322 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK1AO00322 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK1AO00322 AL022069.1-201ENST00000568025 1636 ntBASIC21.49■■□□□ 1.03
UPK1AO00322 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.49■■□□□ 1.03
UPK1AO00322 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.49■■□□□ 1.03
UPK1AO00322 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
UPK1AO00322 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK1AO00322 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK1AO00322 AC131274.2-201ENST00000580697 1507 ntBASIC21.49■■□□□ 1.03
UPK1AO00322 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.49■■□□□ 1.03
UPK1AO00322 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
UPK1AO00322 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
UPK1AO00322 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
UPK1AO00322 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
UPK1AO00322 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
UPK1AO00322 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.48■■□□□ 1.03
UPK1AO00322 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
UPK1AO00322 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UPK1AO00322 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.48■■□□□ 1.03
UPK1AO00322 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UPK1AO00322 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UPK1AO00322 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
UPK1AO00322 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
UPK1AO00322 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK1AO00322 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.47■■□□□ 1.03
UPK1AO00322 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK1AO00322 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK1AO00322 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
UPK1AO00322 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK1AO00322 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK1AO00322 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.47■■□□□ 1.03
UPK1AO00322 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.47■■□□□ 1.03
UPK1AO00322 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
UPK1AO00322 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
UPK1AO00322 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms