Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.99■□□□□ 0.47
COL6A5A8TX70 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A5A8TX70 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A5A8TX70 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC17.99■□□□□ 0.47
COL6A5A8TX70 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A5A8TX70 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
COL6A5A8TX70 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.99■□□□□ 0.47
COL6A5A8TX70 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A5A8TX70 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.99■□□□□ 0.47
COL6A5A8TX70 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A5A8TX70 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A5A8TX70 GUSBP6-202ENST00000438529 1198 ntBASIC17.99■□□□□ 0.47
COL6A5A8TX70 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC17.99■□□□□ 0.47
COL6A5A8TX70 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL6A5A8TX70 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
COL6A5A8TX70 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.98■□□□□ 0.47
COL6A5A8TX70 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A5A8TX70 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.98■□□□□ 0.47
COL6A5A8TX70 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC17.98■□□□□ 0.47
COL6A5A8TX70 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.98■□□□□ 0.47
COL6A5A8TX70 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.98■□□□□ 0.47
COL6A5A8TX70 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A5A8TX70 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
COL6A5A8TX70 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A5A8TX70 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC17.97■□□□□ 0.47
COL6A5A8TX70 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.97■□□□□ 0.47
COL6A5A8TX70 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A5A8TX70 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.97■□□□□ 0.47
COL6A5A8TX70 AC083906.2-201ENST00000511578 360 ntBASIC17.97■□□□□ 0.47
COL6A5A8TX70 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
COL6A5A8TX70 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A5A8TX70 GTSE1-AS1-202ENST00000623117 1518 ntBASIC17.97■□□□□ 0.47
COL6A5A8TX70 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A5A8TX70 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A5A8TX70 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
COL6A5A8TX70 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A5A8TX70 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.96■□□□□ 0.47
COL6A5A8TX70 LINC02228-203ENST00000641970 1355 ntBASIC17.96■□□□□ 0.47
COL6A5A8TX70 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A5A8TX70 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.96■□□□□ 0.47
COL6A5A8TX70 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.96■□□□□ 0.47
COL6A5A8TX70 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A5A8TX70 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.96■□□□□ 0.47
COL6A5A8TX70 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A5A8TX70 AC004854.2-201ENST00000608450 1441 ntBASIC17.95■□□□□ 0.46
COL6A5A8TX70 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.95■□□□□ 0.46
COL6A5A8TX70 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A5A8TX70 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.95■□□□□ 0.46
COL6A5A8TX70 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A5A8TX70 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.95■□□□□ 0.46
COL6A5A8TX70 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A5A8TX70 LINC01003-201ENST00000564834 1764 ntBASIC17.95■□□□□ 0.46
COL6A5A8TX70 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC17.95■□□□□ 0.46
COL6A5A8TX70 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL6A5A8TX70 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC17.94■□□□□ 0.46
COL6A5A8TX70 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC17.94■□□□□ 0.46
COL6A5A8TX70 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.94■□□□□ 0.46
COL6A5A8TX70 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC17.94■□□□□ 0.46
COL6A5A8TX70 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A5A8TX70 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A5A8TX70 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL6A5A8TX70 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.94■□□□□ 0.46
COL6A5A8TX70 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.94■□□□□ 0.46
COL6A5A8TX70 AL138781.1-201ENST00000566567 1274 ntBASIC17.94■□□□□ 0.46
COL6A5A8TX70 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A5A8TX70 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A5A8TX70 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.94■□□□□ 0.46
COL6A5A8TX70 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A5A8TX70 AC091060.1-201ENST00000623524 1766 ntBASIC17.93■□□□□ 0.46
COL6A5A8TX70 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A5A8TX70 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A5A8TX70 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A5A8TX70 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A5A8TX70 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.93■□□□□ 0.46
COL6A5A8TX70 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A5A8TX70 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A5A8TX70 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC17.93■□□□□ 0.46
COL6A5A8TX70 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A5A8TX70 AP004607.4-201ENST00000530158 1459 ntBASIC17.93■□□□□ 0.46
COL6A5A8TX70 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A5A8TX70 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A5A8TX70 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A5A8TX70 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A5A8TX70 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A5A8TX70 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A5A8TX70 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
COL6A5A8TX70 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A5A8TX70 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A5A8TX70 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.92■□□□□ 0.46
COL6A5A8TX70 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A5A8TX70 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.92■□□□□ 0.46
COL6A5A8TX70 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
COL6A5A8TX70 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A5A8TX70 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A5A8TX70 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A5A8TX70 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A5A8TX70 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A5A8TX70 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A5A8TX70 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A5A8TX70 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms