Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV4A0A0B4J268 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV4A0A0B4J268 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV4A0A0B4J268 AF131216.4-201ENST00000638924 1588 ntBASIC16.27■□□□□ 0.2
TRAV4A0A0B4J268 DUSP8P5-201ENST00000422884 1815 ntBASIC16.27■□□□□ 0.2
TRAV4A0A0B4J268 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV4A0A0B4J268 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
TRAV4A0A0B4J268 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV4A0A0B4J268 ALDH1A3-203ENST00000557963 1670 ntBASIC16.27■□□□□ 0.19
TRAV4A0A0B4J268 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV4A0A0B4J268 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TRAV4A0A0B4J268 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV4A0A0B4J268 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV4A0A0B4J268 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV4A0A0B4J268 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
TRAV4A0A0B4J268 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV4A0A0B4J268 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV4A0A0B4J268 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV4A0A0B4J268 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 KRT8P33-201ENST00000508125 1423 ntBASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV4A0A0B4J268 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 AC103834.1-201ENST00000520383 144 ntBASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 EI24-204ENST00000527235 1625 ntTSL 5 BASIC16.23■□□□□ 0.19
TRAV4A0A0B4J268 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 AC103724.3-201ENST00000564481 992 ntBASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRAV4A0A0B4J268 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRAV4A0A0B4J268 AC004448.1-201ENST00000458332 883 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms