Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AC098614.1-201ENST00000368528 745 ntBASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 BAATP1-201ENST00000412284 1225 ntBASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AC007969.1-201ENST00000433675 447 ntBASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AC134312.5-201ENST00000568031 1313 ntBASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC39Q9UFE4 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 OS9-218ENST00000551035 2246 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 AC012441.1-201ENST00000446669 685 ntBASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 TDH-203ENST00000531764 1110 ntBASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 AC138761.1-201ENST00000584393 385 ntBASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 AC020910.6-201ENST00000623084 1459 ntBASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CCDC39Q9UFE4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC39Q9UFE4 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC39Q9UFE4 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
CCDC39Q9UFE4 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC39Q9UFE4 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.3
CCDC39Q9UFE4 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC39Q9UFE4 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms