Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLHC1Q8NHS4 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLHC1Q8NHS4 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 DMBT1P1-203ENST00000636837 4628 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 PEG13-201ENST00000631594 5667 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 PUDPP3-201ENST00000445368 636 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AL355864.2-201ENST00000447420 863 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AP001889.1-201ENST00000525414 633 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AC106820.3-201ENST00000561653 397 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 GNRHR2-203ENST00000581100 1187 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 OR10B1P-201ENST00000601666 907 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 FAM90A12P-201ENST00000519497 2375 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 FAM90A24P-201ENST00000520792 2369 ntBASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.01□□□□□ -0.17
CLHC1Q8NHS4 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 AC023794.5-201ENST00000564380 2157 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 AC090643.2-201ENST00000623442 2029 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 AP000593.2-201ENST00000542775 1433 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 BCRP2-202ENST00000447763 634 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 RN7SL837P-201ENST00000463010 287 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 BCRP6-201ENST00000510112 632 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 BCRP7-201ENST00000511549 544 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 AP003171.2-201ENST00000528208 925 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 MIR4683-201ENST00000579659 81 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 BX088702.1-201ENST00000610784 235 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 AC005252.3-201ENST00000623855 2258 ntBASIC14□□□□□ -0.17
CLHC1Q8NHS4 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms