Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 KRT8P28-201ENST00000433288 1390 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 HYMAI-201ENST00000635591 3347 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AC007950.2-201ENST00000615045 2347 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 MIR339-201ENST00000362153 94 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 MBP-230ENST00000528160 584 ntTSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AL591424.3-201ENST00000614278 872 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AC073869.4-201ENST00000620841 800 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AC245369.7-201ENST00000631386 350 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AL359258.3-201ENST00000622910 2331 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 AL365181.1-201ENST00000564032 1828 ntBASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SMC1BQ8NDV3 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 HLA-DMA-202ENST00000395303 1007 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 OR52M2P-201ENST00000414298 959 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 FAM21EP-201ENST00000417804 985 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 CDK4P1-201ENST00000454213 828 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 AC025186.1-201ENST00000478174 870 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 AC004923.3-201ENST00000527532 355 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 AC016582.2-202ENST00000587765 1094 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 CICP11-201ENST00000434745 2827 ntBASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.02■□□□□ 0.32
SMC1BQ8NDV3 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 AC067930.6-201ENST00000623257 4947 ntBASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 AL662844.4-201ENST00000606367 2838 ntBASIC17.02■□□□□ 0.31
SMC1BQ8NDV3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 AL050341.2-201ENST00000567508 1541 ntBASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.01■□□□□ 0.31
SMC1BQ8NDV3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms