Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MESTP3-201ENST00000503460 968 ntBASIC13.77□□□□□ -0.21
RFX3P48380 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
RFX3P48380 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.77□□□□□ -0.21
RFX3P48380 AC015688.4-201ENST00000580780 1647 ntBASIC13.77□□□□□ -0.21
RFX3P48380 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
RFX3P48380 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC13.77□□□□□ -0.21
RFX3P48380 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.77□□□□□ -0.21
RFX3P48380 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RFX3P48380 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
RFX3P48380 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 HSPA7-201ENST00000445535 1927 ntBASIC13.76□□□□□ -0.21
RFX3P48380 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 AC063926.2-201ENST00000623766 1308 ntBASIC13.76□□□□□ -0.21
RFX3P48380 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 CTBP2P5-201ENST00000454986 1264 ntBASIC13.76□□□□□ -0.21
RFX3P48380 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.76□□□□□ -0.21
RFX3P48380 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 AC138696.2-201ENST00000607376 223 ntBASIC13.76□□□□□ -0.21
RFX3P48380 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.76□□□□□ -0.21
RFX3P48380 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
RFX3P48380 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
RFX3P48380 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RFX3P48380 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
RFX3P48380 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
RFX3P48380 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.76□□□□□ -0.21
RFX3P48380 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
RFX3P48380 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
RFX3P48380 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
RFX3P48380 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 MRPL37P1-201ENST00000592451 1337 ntBASIC13.75□□□□□ -0.21
RFX3P48380 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms