Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 AC003102.2-201ENST00000589195 1469 ntBASIC13.76□□□□□ -0.21
SOX3P41225 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 CHMP1AP1-201ENST00000445563 662 ntBASIC13.76□□□□□ -0.21
SOX3P41225 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.76□□□□□ -0.21
SOX3P41225 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
SOX3P41225 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.76□□□□□ -0.21
SOX3P41225 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.76□□□□□ -0.21
SOX3P41225 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.76□□□□□ -0.21
SOX3P41225 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.76□□□□□ -0.21
SOX3P41225 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 MIR6869-201ENST00000619434 62 ntBASIC13.76□□□□□ -0.21
SOX3P41225 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.76□□□□□ -0.21
SOX3P41225 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SOX3P41225 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.76□□□□□ -0.21
SOX3P41225 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SOX3P41225 SALL4P5-201ENST00000419001 1760 ntBASIC13.76□□□□□ -0.21
SOX3P41225 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
SOX3P41225 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.75□□□□□ -0.21
SOX3P41225 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.75□□□□□ -0.21
SOX3P41225 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.75□□□□□ -0.21
SOX3P41225 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.75□□□□□ -0.21
SOX3P41225 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.75□□□□□ -0.21
SOX3P41225 MIR4525-201ENST00000580000 75 ntBASIC13.75□□□□□ -0.21
SOX3P41225 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 AC005695.3-201ENST00000614522 232 ntBASIC13.75□□□□□ -0.21
SOX3P41225 AL096828.3-201ENST00000615354 462 ntBASIC13.75□□□□□ -0.21
SOX3P41225 AC244157.2-201ENST00000616239 1006 ntBASIC13.75□□□□□ -0.21
SOX3P41225 AP001002.3-201ENST00000623482 206 ntBASIC13.75□□□□□ -0.21
SOX3P41225 AC002472.3-201ENST00000640124 621 ntBASIC13.75□□□□□ -0.21
SOX3P41225 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.75□□□□□ -0.21
SOX3P41225 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SOX3P41225 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SOX3P41225 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms