Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 PFN2-206ENST00000461930 606 ntTSL 4 BASIC15.29■□□□□ 0.04
BDNFP23560 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.29■□□□□ 0.04
BDNFP23560 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 POU5F1P2-201ENST00000521750 823 ntBASIC15.29■□□□□ 0.04
BDNFP23560 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.29■□□□□ 0.04
BDNFP23560 MIR3188-201ENST00000583494 85 ntBASIC15.29■□□□□ 0.04
BDNFP23560 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.29■□□□□ 0.04
BDNFP23560 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC15.29■□□□□ 0.04
BDNFP23560 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC15.29■□□□□ 0.04
BDNFP23560 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
BDNFP23560 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
BDNFP23560 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
BDNFP23560 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BDNFP23560 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 AP002353.1-201ENST00000528257 1599 ntBASIC15.28■□□□□ 0.04
BDNFP23560 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 AC023908.3-201ENST00000564211 3047 ntBASIC15.28■□□□□ 0.04
BDNFP23560 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
BDNFP23560 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC15.28■□□□□ 0.04
BDNFP23560 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 LBH-202ENST00000401506 485 ntTSL 3 BASIC15.28■□□□□ 0.04
BDNFP23560 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 RN7SL769P-201ENST00000469386 295 ntBASIC15.28■□□□□ 0.04
BDNFP23560 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC15.28■□□□□ 0.04
BDNFP23560 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.28■□□□□ 0.04
BDNFP23560 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 RTN3P1-201ENST00000536295 711 ntBASIC15.28■□□□□ 0.04
BDNFP23560 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 AC106872.11-201ENST00000605838 421 ntBASIC15.28■□□□□ 0.04
BDNFP23560 AC021016.3-201ENST00000608367 477 ntBASIC15.28■□□□□ 0.04
BDNFP23560 MEG3_2.1-201ENST00000611456 105 ntBASIC15.28■□□□□ 0.04
BDNFP23560 AL353770.1-201ENST00000614915 403 ntBASIC15.28■□□□□ 0.04
BDNFP23560 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
BDNFP23560 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 RN7SL832P-201ENST00000607781 1756 ntBASIC15.28■□□□□ 0.04
BDNFP23560 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC15.28■□□□□ 0.04
BDNFP23560 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
BDNFP23560 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 AC232323.1-201ENST00000540724 2099 ntBASIC15.28■□□□□ 0.04
BDNFP23560 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
BDNFP23560 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC15.27■□□□□ 0.04
BDNFP23560 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC15.27■□□□□ 0.04
BDNFP23560 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.27■□□□□ 0.04
BDNFP23560 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.27■□□□□ 0.04
BDNFP23560 AC139749.1-202ENST00000617529 3139 ntBASIC15.27■□□□□ 0.04
BDNFP23560 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BDNFP23560 RNA5SP359-201ENST00000364838 113 ntBASIC15.27■□□□□ 0.04
BDNFP23560 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.27■□□□□ 0.04
BDNFP23560 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.27■□□□□ 0.04
BDNFP23560 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC15.27■□□□□ 0.04
BDNFP23560 AL353637.1-201ENST00000451571 732 ntBASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms