Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 XBP1P1-201ENST00000436573 652 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 OR2R1P-201ENST00000441404 914 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 RPL18P13-201ENST00000478088 569 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 SCARNA21-201ENST00000517026 139 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 BNIP3P13-201ENST00000599968 566 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 AC022748.3-201ENST00000621828 275 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 AL591471.1-201ENST00000621855 229 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC16.21■□□□□ 0.19
CCSER1Q9C0I3 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CCSER1Q9C0I3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CCSER1Q9C0I3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AHCYP4-201ENST00000419201 1315 ntBASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AC023794.5-201ENST00000564380 2157 ntBASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 KRT18P15-201ENST00000458108 1291 ntBASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 CCT8L1P-201ENST00000465400 1674 ntBASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCSER1Q9C0I3 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.19■□□□□ 0.18
CCSER1Q9C0I3 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
CCSER1Q9C0I3 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCSER1Q9C0I3 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.19■□□□□ 0.18
CCSER1Q9C0I3 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCSER1Q9C0I3 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCSER1Q9C0I3 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms