Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 KRT18P8-201ENST00000581937 1246 ntBASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 AC008738.7-201ENST00000609744 511 ntBASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28BQ9BUN5 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.21□□□□□ -0.14
CCDC28BQ9BUN5 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28BQ9BUN5 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.21□□□□□ -0.14
CCDC28BQ9BUN5 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
CCDC28BQ9BUN5 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC14.21□□□□□ -0.14
CCDC28BQ9BUN5 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28BQ9BUN5 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CCDC28BQ9BUN5 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.21□□□□□ -0.14
CCDC28BQ9BUN5 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 TPRX2P-201ENST00000535362 881 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AC023310.3-201ENST00000557027 670 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AC100756.1-201ENST00000562736 682 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AC138749.3-201ENST00000567691 622 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AC138696.2-201ENST00000607376 223 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AC116165.1-201ENST00000611806 668 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AP005019.2-201ENST00000615104 511 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 AC106818.1-201ENST00000623223 3242 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 PCDHB18P-202ENST00000526308 3197 ntBASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CCDC28BQ9BUN5 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AL022323.5-201ENST00000624101 2059 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC024075.2-201ENST00000598112 1473 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AL731571.1-201ENST00000617058 5428 ntBASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC14.19□□□□□ -0.14
CCDC28BQ9BUN5 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms