Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 AC015818.8-201ENST00000587907 1519 ntBASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ATG4AQ8WYN0 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 ARSEP1-201ENST00000420443 635 ntBASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 AC025279.2-201ENST00000569730 653 ntBASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 STK3-218ENST00000617590 2485 ntTSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 RET-205ENST00000615310 4337 ntTSL 5 BASIC15.11■□□□□ 0.01
ATG4AQ8WYN0 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 AC099521.3-201ENST00000624251 2938 ntBASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 AC004945.1-201ENST00000416738 983 ntBASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 AL161932.2-201ENST00000435436 679 ntBASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 AC011495.1-201ENST00000498085 584 ntBASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 AC027237.1-201ENST00000560942 655 ntBASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 AC005014.1-201ENST00000432006 2976 ntBASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ATG4AQ8WYN0 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.09■□□□□ 0.01
ATG4AQ8WYN0 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ATG4AQ8WYN0 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
ATG4AQ8WYN0 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
ATG4AQ8WYN0 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
ATG4AQ8WYN0 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.09■□□□□ 0.01
ATG4AQ8WYN0 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms