Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 HNRNPA1P2-207ENST00000432375 960 ntBASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 EEF1DP2-201ENST00000433698 843 ntBASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 SKA2-205ENST00000580541 689 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 AL136982.5-201ENST00000605222 294 ntBASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 RNVU1-8-201ENST00000364272 125 ntBASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 RPL14-203ENST00000416518 812 ntTSL 3 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 AC005586.2-201ENST00000563946 837 ntBASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC88AQ3V6T2 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AC092903.1-201ENST00000466506 262 ntBASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AP005264.5-201ENST00000590066 467 ntBASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AC080013.5-201ENST00000607044 679 ntBASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 CICP24-201ENST00000605464 2705 ntBASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 GPX3-202ENST00000517973 612 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AC145285.5-201ENST00000562217 361 ntBASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC88AQ3V6T2 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms