Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
LIM2P55344 AL008718.2-201ENST00000609206 1313 ntBASIC13.82□□□□□ -0.2
LIM2P55344 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.82□□□□□ -0.2
LIM2P55344 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 MBLAC2-202ENST00000514906 1936 ntBASIC13.82□□□□□ -0.2
LIM2P55344 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.82□□□□□ -0.2
LIM2P55344 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.82□□□□□ -0.2
LIM2P55344 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
LIM2P55344 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.81□□□□□ -0.2
LIM2P55344 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.81□□□□□ -0.2
LIM2P55344 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
LIM2P55344 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
LIM2P55344 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.81□□□□□ -0.2
LIM2P55344 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.81□□□□□ -0.2
LIM2P55344 AC021723.1-201ENST00000486306 515 ntBASIC13.81□□□□□ -0.2
LIM2P55344 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.81□□□□□ -0.2
LIM2P55344 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.81□□□□□ -0.2
LIM2P55344 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.81□□□□□ -0.2
LIM2P55344 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 AC009884.2-201ENST00000603110 324 ntBASIC13.81□□□□□ -0.2
LIM2P55344 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.81□□□□□ -0.2
LIM2P55344 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.81□□□□□ -0.2
LIM2P55344 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
LIM2P55344 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 KRT8P29-201ENST00000420409 1371 ntBASIC13.81□□□□□ -0.2
LIM2P55344 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.81□□□□□ -0.2
LIM2P55344 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LIM2P55344 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.8□□□□□ -0.2
LIM2P55344 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.8□□□□□ -0.2
LIM2P55344 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.8□□□□□ -0.2
LIM2P55344 POM121L10P-201ENST00000436994 1285 ntBASIC13.8□□□□□ -0.2
LIM2P55344 TUBB8P8-201ENST00000458717 1058 ntBASIC13.8□□□□□ -0.2
LIM2P55344 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.8□□□□□ -0.2
LIM2P55344 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.8□□□□□ -0.2
LIM2P55344 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 RBM8B-201ENST00000555532 525 ntBASIC13.8□□□□□ -0.2
LIM2P55344 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.8□□□□□ -0.2
LIM2P55344 AC005586.2-201ENST00000563946 837 ntBASIC13.8□□□□□ -0.2
LIM2P55344 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 AL023803.2-201ENST00000620080 638 ntBASIC13.8□□□□□ -0.2
LIM2P55344 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LIM2P55344 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LIM2P55344 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms