Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MRE11P49959 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MRE11P49959 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
MRE11P49959 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MRE11P49959 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
MRE11P49959 VENTXP1-201ENST00000569334 2716 ntBASIC17.08■□□□□ 0.32
MRE11P49959 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
MRE11P49959 CICP1-201ENST00000416803 2410 ntBASIC17.08■□□□□ 0.32
MRE11P49959 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC17.08■□□□□ 0.32
MRE11P49959 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
MRE11P49959 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
MRE11P49959 AC135782.3-201ENST00000562782 2105 ntBASIC17.08■□□□□ 0.32
MRE11P49959 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
MRE11P49959 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
MRE11P49959 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MRE11P49959 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC17.08■□□□□ 0.32
MRE11P49959 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
MRE11P49959 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
MRE11P49959 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
MRE11P49959 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 AC011840.2-201ENST00000563063 1520 ntBASIC17.07■□□□□ 0.32
MRE11P49959 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC17.07■□□□□ 0.32
MRE11P49959 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.07■□□□□ 0.32
MRE11P49959 AC131212.3-201ENST00000624087 4219 ntBASIC17.07■□□□□ 0.32
MRE11P49959 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.07■□□□□ 0.32
MRE11P49959 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
MRE11P49959 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 RNA5SP410-201ENST00000516285 106 ntBASIC17.07■□□□□ 0.32
MRE11P49959 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.07■□□□□ 0.32
MRE11P49959 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
MRE11P49959 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
MRE11P49959 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.07■□□□□ 0.32
MRE11P49959 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 AL138918.1-201ENST00000568306 659 ntBASIC17.07■□□□□ 0.32
MRE11P49959 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
MRE11P49959 AC074044.1-201ENST00000609673 707 ntBASIC17.07■□□□□ 0.32
MRE11P49959 MIR6775-201ENST00000617557 69 ntBASIC17.07■□□□□ 0.32
MRE11P49959 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MRE11P49959 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MRE11P49959 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
MRE11P49959 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MRE11P49959 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC17.07■□□□□ 0.32
MRE11P49959 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
MRE11P49959 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
MRE11P49959 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.06■□□□□ 0.32
MRE11P49959 POM121L14P-201ENST00000406100 1558 ntBASIC17.06■□□□□ 0.32
MRE11P49959 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
MRE11P49959 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 RHPN1-AS1-201ENST00000518049 1918 ntBASIC17.06■□□□□ 0.32
MRE11P49959 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
MRE11P49959 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
MRE11P49959 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 MIR1908-201ENST00000410394 80 ntBASIC17.06■□□□□ 0.32
MRE11P49959 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.06■□□□□ 0.32
MRE11P49959 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 AC099548.2-209ENST00000480264 625 ntBASIC17.06■□□□□ 0.32
MRE11P49959 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 AC105233.2-201ENST00000523697 349 ntBASIC17.06■□□□□ 0.32
MRE11P49959 AF228730.5-201ENST00000530288 346 ntBASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms