Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
COL8A1P27658 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 PTGER4P2-201ENST00000328411 252 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 Z97985.1-201ENST00000332270 946 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC12.7□□□□□ -0.38
COL8A1P27658 PTGER4P3-201ENST00000458150 252 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC12.7□□□□□ -0.38
COL8A1P27658 RN7SL582P-201ENST00000491078 279 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 RBM4-207ENST00000506523 654 ntTSL 3 BASIC12.7□□□□□ -0.38
COL8A1P27658 AC106047.2-201ENST00000511723 743 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC12.7□□□□□ -0.38
COL8A1P27658 AC226150.1-201ENST00000544259 466 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC12.7□□□□□ -0.38
COL8A1P27658 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC12.7□□□□□ -0.38
COL8A1P27658 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC12.7□□□□□ -0.38
COL8A1P27658 RN7SL121P-201ENST00000584223 273 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 AC010976.2-201ENST00000609697 852 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
COL8A1P27658 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.7□□□□□ -0.38
COL8A1P27658 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 AC092127.1-201ENST00000567093 3455 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL8A1P27658 FAS-202ENST00000352159 1722 ntTSL 5 BASIC12.7□□□□□ -0.38
COL8A1P27658 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL8A1P27658 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
COL8A1P27658 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL8A1P27658 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 TMBIM7P-202ENST00000641474 1516 ntBASIC12.69□□□□□ -0.38
COL8A1P27658 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC12.69□□□□□ -0.38
COL8A1P27658 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 KRT18P46-201ENST00000435568 1279 ntBASIC12.69□□□□□ -0.38
COL8A1P27658 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.69□□□□□ -0.38
COL8A1P27658 ERP29P1-201ENST00000442902 706 ntBASIC12.69□□□□□ -0.38
COL8A1P27658 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 GOSR1-204ENST00000451249 1231 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC12.69□□□□□ -0.38
COL8A1P27658 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC12.69□□□□□ -0.38
COL8A1P27658 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.69□□□□□ -0.38
COL8A1P27658 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 AL391001.1-201ENST00000602747 715 ntBASIC12.69□□□□□ -0.38
COL8A1P27658 AC007250.1-201ENST00000608934 338 ntBASIC12.69□□□□□ -0.38
COL8A1P27658 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC12.69□□□□□ -0.38
COL8A1P27658 TP53-221ENST00000615910 1149 ntTSL 5 BASIC12.69□□□□□ -0.38
COL8A1P27658 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
COL8A1P27658 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC12.69□□□□□ -0.38
COL8A1P27658 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
COL8A1P27658 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
COL8A1P27658 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.69□□□□□ -0.38
COL8A1P27658 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
COL8A1P27658 FTX-216ENST00000638985 1367 ntTSL 5 BASIC12.69□□□□□ -0.38
COL8A1P27658 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms