Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 FTX-216ENST00000638985 1367 ntTSL 5 BASIC18.76■□□□□ 0.59
COL3A1P02461 OR6D1P-202ENST00000641007 5290 ntBASIC18.76■□□□□ 0.59
COL3A1P02461 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL3A1P02461 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
COL3A1P02461 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC18.75■□□□□ 0.59
COL3A1P02461 FMO6P-201ENST00000236166 1620 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 AC093462.1-201ENST00000621167 1683 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC18.75■□□□□ 0.59
COL3A1P02461 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC18.75■□□□□ 0.59
COL3A1P02461 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC18.75■□□□□ 0.59
COL3A1P02461 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC18.75■□□□□ 0.59
COL3A1P02461 AL592076.1-201ENST00000424448 303 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC18.75■□□□□ 0.59
COL3A1P02461 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC18.75■□□□□ 0.59
COL3A1P02461 AC008267.1-201ENST00000474858 1069 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
COL3A1P02461 CFL1-206ENST00000527344 962 ntTSL 2 BASIC18.75■□□□□ 0.59
COL3A1P02461 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL3A1P02461 AC068867.1-201ENST00000559855 150 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC18.75■□□□□ 0.59
COL3A1P02461 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC18.75■□□□□ 0.59
COL3A1P02461 AC107464.3-201ENST00000609172 737 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 GOLGA8IP-202ENST00000611635 2100 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 AL353726.2-201ENST00000623259 884 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC18.75■□□□□ 0.59
COL3A1P02461 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.75■□□□□ 0.59
COL3A1P02461 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC18.75■□□□□ 0.59
COL3A1P02461 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL3A1P02461 TBC1D27-202ENST00000424239 1573 ntBASIC18.75■□□□□ 0.59
COL3A1P02461 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL3A1P02461 DDC-204ENST00000426377 1700 ntTSL 3 BASIC18.75■□□□□ 0.59
COL3A1P02461 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL3A1P02461 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 AC011474.4-201ENST00000623523 2076 ntBASIC18.74■□□□□ 0.59
COL3A1P02461 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL3A1P02461 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC18.74■□□□□ 0.59
COL3A1P02461 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC18.74■□□□□ 0.59
COL3A1P02461 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC18.74■□□□□ 0.59
COL3A1P02461 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC18.74■□□□□ 0.59
COL3A1P02461 AK2P2-201ENST00000439142 405 ntBASIC18.74■□□□□ 0.59
COL3A1P02461 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC18.74■□□□□ 0.59
COL3A1P02461 OR5BD1P-201ENST00000532527 817 ntBASIC18.74■□□□□ 0.59
COL3A1P02461 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 MIR4265-201ENST00000582152 99 ntBASIC18.74■□□□□ 0.59
COL3A1P02461 MIR5572-201ENST00000583188 137 ntBASIC18.74■□□□□ 0.59
COL3A1P02461 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.74■□□□□ 0.59
COL3A1P02461 AL161773.1-201ENST00000624845 863 ntBASIC18.74■□□□□ 0.59
COL3A1P02461 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC18.74■□□□□ 0.59
COL3A1P02461 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.74■□□□□ 0.59
COL3A1P02461 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
COL3A1P02461 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL3A1P02461 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL3A1P02461 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
COL3A1P02461 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC18.73■□□□□ 0.59
COL3A1P02461 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 OS9-204ENST00000389146 2091 ntTSL 2 BASIC18.73■□□□□ 0.59
COL3A1P02461 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
COL3A1P02461 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL3A1P02461 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC18.73■□□□□ 0.59
COL3A1P02461 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL3A1P02461 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.73■□□□□ 0.59
COL3A1P02461 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC18.73■□□□□ 0.59
COL3A1P02461 RNA5SP417-201ENST00000516459 108 ntBASIC18.73■□□□□ 0.59
COL3A1P02461 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms