Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RNF40O75150 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF40O75150 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
RNF40O75150 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
RNF40O75150 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.86■□□□□ 0.13
RNF40O75150 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF40O75150 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF40O75150 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF40O75150 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.86■□□□□ 0.13
RNF40O75150 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
RNF40O75150 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
RNF40O75150 DKFZP434A062-201ENST00000573103 5021 ntBASIC15.86■□□□□ 0.13
RNF40O75150 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
RNF40O75150 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 AC015909.5-201ENST00000624336 2266 ntBASIC15.85■□□□□ 0.13
RNF40O75150 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 AC055811.4-201ENST00000624039 1754 ntBASIC15.85■□□□□ 0.13
RNF40O75150 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC15.85■□□□□ 0.13
RNF40O75150 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
RNF40O75150 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 APOBEC3H-201ENST00000348946 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.85■□□□□ 0.13
RNF40O75150 GPAA1P2-201ENST00000417923 928 ntBASIC15.85■□□□□ 0.13
RNF40O75150 CNN2P8-201ENST00000421872 913 ntBASIC15.85■□□□□ 0.13
RNF40O75150 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.85■□□□□ 0.13
RNF40O75150 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.85■□□□□ 0.13
RNF40O75150 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.85■□□□□ 0.13
RNF40O75150 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.85■□□□□ 0.13
RNF40O75150 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.85■□□□□ 0.13
RNF40O75150 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.85■□□□□ 0.13
RNF40O75150 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.85■□□□□ 0.13
RNF40O75150 AC023310.1-201ENST00000554836 735 ntBASIC15.85■□□□□ 0.13
RNF40O75150 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.85■□□□□ 0.13
RNF40O75150 AC025279.2-201ENST00000569730 653 ntBASIC15.85■□□□□ 0.13
RNF40O75150 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.85■□□□□ 0.13
RNF40O75150 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.85■□□□□ 0.13
RNF40O75150 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF40O75150 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF40O75150 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF40O75150 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
RNF40O75150 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RNF40O75150 AL591122.2-201ENST00000624125 1853 ntBASIC15.84■□□□□ 0.13
RNF40O75150 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF40O75150 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF40O75150 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF40O75150 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
RNF40O75150 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF40O75150 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF40O75150 AC083964.2-201ENST00000623988 2396 ntBASIC15.84■□□□□ 0.13
RNF40O75150 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF40O75150 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF40O75150 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF40O75150 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF40O75150 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RNF40O75150 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF40O75150 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF40O75150 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF40O75150 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF40O75150 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
RNF40O75150 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF40O75150 MIR326-201ENST00000362220 95 ntBASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms