Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC14.56□□□□□ -0.08
SHOX2O60902 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.56□□□□□ -0.08
SHOX2O60902 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.56□□□□□ -0.08
SHOX2O60902 FDX1P1-201ENST00000449115 551 ntBASIC14.56□□□□□ -0.08
SHOX2O60902 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 FAM86C2P-203ENST00000528684 1004 ntBASIC14.56□□□□□ -0.08
SHOX2O60902 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
SHOX2O60902 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.56□□□□□ -0.08
SHOX2O60902 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.56□□□□□ -0.08
SHOX2O60902 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
SHOX2O60902 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 AC104506.1-201ENST00000609247 429 ntBASIC14.56□□□□□ -0.08
SHOX2O60902 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.56□□□□□ -0.08
SHOX2O60902 BX640515.1-201ENST00000617215 977 ntBASIC14.56□□□□□ -0.08
SHOX2O60902 FAM197Y3-203ENST00000618346 717 ntBASIC14.56□□□□□ -0.08
SHOX2O60902 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 EDARADD-202ENST00000359362 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SHOX2O60902 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC14.56□□□□□ -0.08
SHOX2O60902 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC14.56□□□□□ -0.08
SHOX2O60902 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.55□□□□□ -0.08
SHOX2O60902 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SHOX2O60902 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 IP6K3-201ENST00000293756 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.55□□□□□ -0.08
SHOX2O60902 HPSE2-202ENST00000370549 2121 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.55□□□□□ -0.08
SHOX2O60902 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.55□□□□□ -0.08
SHOX2O60902 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.55□□□□□ -0.08
SHOX2O60902 AC138761.1-201ENST00000584393 385 ntBASIC14.55□□□□□ -0.08
SHOX2O60902 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.55□□□□□ -0.08
SHOX2O60902 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 MPP4-203ENST00000396886 2250 ntTSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SHOX2O60902 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SHOX2O60902 CNTROB-203ENST00000565740 2783 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SHOX2O60902 SLC13A4-201ENST00000354042 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.55□□□□□ -0.08
SHOX2O60902 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC14.55□□□□□ -0.08
SHOX2O60902 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHOX2O60902 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC14.54□□□□□ -0.08
SHOX2O60902 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC14.54□□□□□ -0.08
SHOX2O60902 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 CCDC60-201ENST00000327554 2450 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 ZNF302-203ENST00000457781 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SHOX2O60902 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 PAM-203ENST00000346918 3302 ntTSL 5 BASIC14.54□□□□□ -0.08
SHOX2O60902 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.54□□□□□ -0.08
SHOX2O60902 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SHOX2O60902 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.54□□□□□ -0.08
SHOX2O60902 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms